Gene Sfri_3984 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSfri_3984 
Symbol 
ID4280875 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella frigidimarina NCIMB 400 
KingdomBacteria 
Replicon accessionNC_008345 
Strand- 
Start bp4747523 
End bp4748158 
Gene Length636 bp 
Protein Length211 aa 
Translation table11 
GC content43% 
IMG OID638136805 
Producttranscriptional regulator, TetR family protein 
Protein accessionYP_752648 
Protein GI114565134 
COG category[K] Transcription 
COG ID[COG1309] Transcriptional regulator 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones31 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGACAATAA CTAAAGCAGC TTGCGTCGGA CGCCCTCGTG GGTTTGATAT CGACTTTGCA 
TTAGAGCAAG CGCTACATGT TTTTTGGCGT AATGGCTATG AAGGTACCTC TATAAGCGAA 
TTAACTGAGG TGATGGGAAT TAAAAAGCCC AGCCTATATG CTGCATTTGG TAATAAAGAG 
CAGTTGTTCT TAAAAGCCAT TGAGCTTTAT GAAAATCGCC CAGATTCGCT ATTTAATACC 
GCCTTTAAAC ATGAGCATAT TGCCGATGTT ATTCGAGCTT TATTAGTAGG CGCGGCGGCG 
CAGTTCACCG ATTGTAGTCA CCCGCAAGGT TGTGCGCTAA TCAATAGTGC GTTGTCATGC 
AATGAAGCAA GCGAAGGGAT TAAAGAAGCG GTTCATCTGC TGCAAACTAA ACATCAATCT 
GAATTAATTG ATCAGTTTGC TGAGGCTAAA CAAAGAGGCG AATTAGCTGA TGATTGTCAG 
CCGAAAGTGT TAGCAACCTT GATCGTGACA TTATTTAAAG GCATGTCTAT CCAAGCTGCT 
GATGGTGCGA CACATGATGA TTTACGTCAT GTTGCTGAAA TGGCGGTTAC GGGGATTTTA 
GCTCAACATG TCAAAGGGTA TTCACCCGTT AAATAA
 
Protein sequence
MTITKAACVG RPRGFDIDFA LEQALHVFWR NGYEGTSISE LTEVMGIKKP SLYAAFGNKE 
QLFLKAIELY ENRPDSLFNT AFKHEHIADV IRALLVGAAA QFTDCSHPQG CALINSALSC 
NEASEGIKEA VHLLQTKHQS ELIDQFAEAK QRGELADDCQ PKVLATLIVT LFKGMSIQAA 
DGATHDDLRH VAEMAVTGIL AQHVKGYSPV K