Gene Sfri_3946 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSfri_3946 
Symbol 
ID4280837 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella frigidimarina NCIMB 400 
KingdomBacteria 
Replicon accessionNC_008345 
Strand+ 
Start bp4709299 
End bp4709961 
Gene Length663 bp 
Protein Length220 aa 
Translation table11 
GC content40% 
IMG OID638136767 
Producthypothetical protein 
Protein accessionYP_752610 
Protein GI114565096 
COG category[H] Coenzyme transport and metabolism 
COG ID[COG2227] 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones26 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAATGTAT GCCCGCTCTG TAATCATTGT GCTCAATTTT TTGTTCAAGA CAAAAAAAGA 
GCTTTCTACA TCTGCGAACG CTGTGGCTTA GTCTTTGCTA ACCCAAAATC ACATCTTATG 
CCCGATATTG AGCGTCAGCG TTACGGTCGA GCACAAAAGT CGTCGAATCA AAAACCATTA 
TCGCAATTTA TACTGCCACT ATTAGGCCAA ATATCTCAGC AACAGAGCGG CGCGTTAACT 
GGCCTTAATT TTGGCCGCTT ACTTGACGAA CAGAGCAGGC AATCCATTGT TGATGCTGGT 
CATCTTGTTA ATCAGTACGA CCCATTCTTT GCTGCAGATC AGTCGGTACT GAAACATAGC 
TATGATTTTG TATGTTGTTA CCGGGTATTC GAACACTTTC GTCATCCACA CCGTGAATGG 
AAGTTACTCA ATCAGCTGGT TAAGCCCAAT GGCTGGTTAG CAATAAGTAC ACCTTTATTG 
ACCGATCAAG ACCATTTTGC TAAATGGCAT TACAAAAACA ATCCAACTCA TGTAAGCTTT 
TATCAGCAAC AGACATTCGA ATATTTAGCA TTAAATAGTG ATTTTGAGCT ATTATTTGCA 
TCGAAAGATC TGGTTTTGAT GCAAAAATCA TCAAAATCTG ATATAAAGCG CATCCTTATT 
TAG
 
Protein sequence
MNVCPLCNHC AQFFVQDKKR AFYICERCGL VFANPKSHLM PDIERQRYGR AQKSSNQKPL 
SQFILPLLGQ ISQQQSGALT GLNFGRLLDE QSRQSIVDAG HLVNQYDPFF AADQSVLKHS 
YDFVCCYRVF EHFRHPHREW KLLNQLVKPN GWLAISTPLL TDQDHFAKWH YKNNPTHVSF 
YQQQTFEYLA LNSDFELLFA SKDLVLMQKS SKSDIKRILI