Gene Sfri_3891 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSfri_3891 
Symbol 
ID4280782 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella frigidimarina NCIMB 400 
KingdomBacteria 
Replicon accessionNC_008345 
Strand- 
Start bp4645694 
End bp4646347 
Gene Length654 bp 
Protein Length217 aa 
Translation table11 
GC content42% 
IMG OID638136712 
Productputative transcriptional regulator, TetR family protein 
Protein accessionYP_752555 
Protein GI114565041 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones38 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAGCAGCT GGGAACAACG TGGCAACTAT CTGATAGAAG TATCACAACG TTGTTTAAAG 
GGGCGTAAAA CCTTTGATTT GTGCCGCTCG CATTTAGTTC AAGCTAGCCA GATATCCAAA 
GGCACAATCT ACAATCACTT TACTTCAGAA GCAGACTTAA TTATTGCCGT TGCCTGTGCA 
GATTATCGCC ATTGGCTGAT GCAAGCTGAA CAAGACAATC AACAGTATAG CGACCCTTAT 
TTACGGTTTA TTTTTCATCA TTGCCAGCGT TTGTATCGTA TTTTGTCTGA GCAAGCATTT 
GTCATTGCCC GAGTGGTTCC TAACGAAGCC ATTTTATCAC AAGCTAGTGA TTACTATCGT 
GAGCGCTTTG AGCGGGTTCT TGAGCAATAT CAGCAGTGGA ATGCACAAAC CTTAATGGAA 
ATTGGTGAGG TCAGTGGCTT TAACCGCAGT GAGTTACTGT GTGACTATTT ACGCGGTGCG 
ATGATCAATA GCGATGATGC GCAAAAACAT TACAACTATG CAGAAATGTA CTATCAACAT 
AGTTTTGCCA TGACACAACT TATGGGGCAT TCACAAAAGC GGCCCCCTAA CATTAAGGTC 
TTTTTGCAGT GGTTAGCTGA AAAACAGACA GAAAAAACGT TAGTTGCTGG GTAA
 
Protein sequence
MSSWEQRGNY LIEVSQRCLK GRKTFDLCRS HLVQASQISK GTIYNHFTSE ADLIIAVACA 
DYRHWLMQAE QDNQQYSDPY LRFIFHHCQR LYRILSEQAF VIARVVPNEA ILSQASDYYR 
ERFERVLEQY QQWNAQTLME IGEVSGFNRS ELLCDYLRGA MINSDDAQKH YNYAEMYYQH 
SFAMTQLMGH SQKRPPNIKV FLQWLAEKQT EKTLVAG