Gene Sfri_3764 details

Gene Information

• Locus tag: Sfri_3764
• ID: 4280657
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Shewanella frigidimarina NCIMB 400
• Kingdom: Bacteria
• Replicon accession: NC_008345
• Strand: +
• Start bp: 4474481
• End bp: 4475005
• Gene Length: 525 bp
• Protein Length: 174 aa
• Translation table: 11
• GC content: 43%
• IMG OID: 638136577
• Product: ATP-dependent protease peptidase subunit
• Protein accession: YP_752430
• Protein GI: 114564916
• COG category: [O] Posttranslational modification, protein turnover, chaperones
• COG ID: [COG5405] ATP-dependent protease HslVU (ClpYQ), peptidase subunit

Plasmid Coverage information

• Num covering plasmid clones: 8
• Plasmid unclonability p-value: 0.000856229
• Plasmid hitchhiking: Yes
• Plasmid clonability: hitchhiker

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

GTGACTACTA TCGTATCCGT ACGCCGTAAT AATCAAGTTG TCATCGCTGG TGATGGCCAA 
GTGTCTCTAG GCAATACCGT GATGAAAGGT AATGCACGTA AAGTGCGCCG CCTATACCAC 
AATAAAGTAT TAGCCGGTTT TGCTGGCGGT ACTGCCGATG CATTTACTCT TTTTGAGCGT 
TTTGAAGCCA AGCTCGAAAT GCATCAAGGC CATTTATTAA AATCTGCCGT AGAGCTTGCC 
AAAGATTGGC GTAGCGACAA AATGCTGCGT AAGCTCGAAG CTATGTTGGT TGTGGCTGAT 
ACTGAATCAT CATTAATTAT TACCGGTAAT GGCGACGTCG TTCAACCGGA ATATGACTTA 
ATTGCGATTG GTTCTGGCGG AAACTATGCT CATGCATCAG CCTTAGCATT ACTGCAAAAT 
ACTGAGTTAA GCGCGGAAGA AATAGCAGAA AAATCACTGA CGATTGCAGG CGATATTTGC 
GTATTCACCA ACCAATTCAA AACTATCGAA AAGTTAGACT ACTAA 

 

Protein sequence

MTTIVSVRRN NQVVIAGDGQ VSLGNTVMKG NARKVRRLYH NKVLAGFAGG TADAFTLFER 
FEAKLEMHQG HLLKSAVELA KDWRSDKMLR KLEAMLVVAD TESSLIITGN GDVVQPEYDL 
IAIGSGGNYA HASALALLQN TELSAEEIAE KSLTIAGDIC VFTNQFKTIE KLDY