Gene Sfri_3743 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSfri_3743 
Symbol 
ID4280636 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella frigidimarina NCIMB 400 
KingdomBacteria 
Replicon accessionNC_008345 
Strand- 
Start bp4450638 
End bp4451117 
Gene Length480 bp 
Protein Length159 aa 
Translation table11 
GC content42% 
IMG OID638136556 
Productmethylation site containing protein 
Protein accessionYP_752409 
Protein GI114564895 
COG category 
COG ID 
TIGRFAM ID[TIGR02532] prepilin-type N-terminal cleavage/methylation domain 


Plasmid Coverage information

Num covering plasmid clones16 
Plasmid unclonability p-value0.160506 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
GTGAGTCAAC AACGTAATGT TCAGCTTGGG TTTACCTTGG TTGAATTGGT TACTACCATG 
ATTGTGATTG CTATTATTGC CGTGGCGGTG TTGCCGCGTT TGATGTCTGA TTCATCTTTT 
AGTGCCTACA GTTTACGCAG TGAATTTATC AGTGAGTTAC GCCAGGTCCA GCTTAAAGCC 
ATTCAAAATA CCGATCAGTG TTATCAAATT GATGTGACAT CAAGCGGTTA TACGTTACGC 
CATTTTAGCG AAAGGGCCGC TAGCTTATGT ACAAACCAGG TACGTATTGA GCAACAACAA 
ACTTTCAGTG GCAATGCTCA TATTGCTTTA AGCAGTAATG CTAGCCAAGT GTTTTCGATT 
ACCTTTGACA GCTTAGGTCG CATGCTGTCT CCAGCGTGTG CAGGTAATTG TTTTAATGTA 
GTAGCAGATG AGACCTTAAC CATTGCGGTT GAGTCAGAGG GGTATATTTA TGCTCCGTAA
 
Protein sequence
MSQQRNVQLG FTLVELVTTM IVIAIIAVAV LPRLMSDSSF SAYSLRSEFI SELRQVQLKA 
IQNTDQCYQI DVTSSGYTLR HFSERAASLC TNQVRIEQQQ TFSGNAHIAL SSNASQVFSI 
TFDSLGRMLS PACAGNCFNV VADETLTIAV ESEGYIYAP