Gene Sfri_3707 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSfri_3707 
Symbol 
ID4280600 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella frigidimarina NCIMB 400 
KingdomBacteria 
Replicon accessionNC_008345 
Strand- 
Start bp4397427 
End bp4398092 
Gene Length666 bp 
Protein Length221 aa 
Translation table11 
GC content42% 
IMG OID638136520 
ProductVacJ family lipoprotein 
Protein accessionYP_752373 
Protein GI114564859 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG2853] Surface lipoprotein 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones11 
Plasmid unclonability p-value0.00967458 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGACAAAT ATGCTTTAAA ACCTGCAGCA GAAGGCTATG AAACCATCCC TCAGCCGATC 
CGACAAGGTG TGACAAATCT GCTATCCAAC CTAAGTGAAC CTCTTTACGC AGTAAATAAC 
CTCTTACAAT GGAAAGTGAC CGACAGCGGT AGCAGTGTTT TACGTTTTGT GGTCAACACG 
ACAATCGGCC TTGTGGGGCT TTTTGATCCA GCTACCGATA TGGGATTAAT GAAAAAAGAA 
GAAACATTTG CGCAAACCTT TGGTGTTTGG GGTATTGGCA ACGGACCTTT TATTATGTGG 
CCTGTTTATG GTGCCAGTAC TGCACGTAAT ACCGTTGGCG ATTTTGTTGA TGTGTTTGTT 
TATCCCTTAT CTATTCTGTC GTTTGAACAA AGGGCCGGAA AGTTTGTGCT GGAAGGTTTA 
GACAGTCGGA TTGAATTTAA GCAATATGAA CCCATATTAG ACGGATCGTT AGATCCTTAT 
GGCTATGTTA AAGATGTCTA TTTGCAGCGA GATGCTCACT TGGTTAATGA CGGTAAAGTC 
GATGAGACTG AATCTGACGA ATTTGATCTA GAGTTTGATG ACGAACTATT AGATGATGAG 
CTATTAAATG ACGCACCTGC AGACGACAAA TTAGACCACA ACACTGATTT GGAGATAACG 
GACTAG
 
Protein sequence
MDKYALKPAA EGYETIPQPI RQGVTNLLSN LSEPLYAVNN LLQWKVTDSG SSVLRFVVNT 
TIGLVGLFDP ATDMGLMKKE ETFAQTFGVW GIGNGPFIMW PVYGASTARN TVGDFVDVFV 
YPLSILSFEQ RAGKFVLEGL DSRIEFKQYE PILDGSLDPY GYVKDVYLQR DAHLVNDGKV 
DETESDEFDL EFDDELLDDE LLNDAPADDK LDHNTDLEIT D