Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sfri_3692 |
Symbol | |
ID | 4280585 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella frigidimarina NCIMB 400 |
Kingdom | Bacteria |
Replicon accession | NC_008345 |
Strand | - |
Start bp | 4382030 |
End bp | 4383283 |
Gene Length | 1254 bp |
Protein Length | 417 aa |
Translation table | 11 |
GC content | 44% |
IMG OID | 638136505 |
Product | outer membrane porin |
Protein accession | YP_752358 |
Protein GI | 114564844 |
COG category | |
COG ID | |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 18 |
Plasmid unclonability p-value | 0.844156 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGATGATGA AAACAAAACT ACTGCCTTTG GTTGTTGCAT GTCTCGCTGC AAGTCCAGCT TTTGCGGCTG AGCCTATGGC CAACATATTT AATGACGGCA GTGTAAAAGG TCAATTTCAA CTATTTGATT TTCAGCGTAA CTTTGATGGA GAAAGTACTG ACAGACGTGA TACATCATTT GGTGGTCTGT TTTACTTGCG CTCTGGCGAA GCTAACGGCA TAAGCTTTGG CAGTTCATTT GCTTCAGCTA ACCCAATTTG GGATGCAAAC GATGATGGTC TGTACGGACT TGTTGGTGGA GGAGCACCAG GCTCTGTGGT AGAACGTACA TCAGTTAACC GTTTACAAGA ATACTTTGTT AGCGGTAATT GGTATGACAC CAAAATAGTG GTTGGTGCTC AAGAGTTACG TACACCTATG ATGAACCCGT TTCCATTAAG AGCAATCCCG TTCACGTATC GTGGTGCCAG TATTAAAAAT ACCTCAATTG AGAACTTGGG CGTATCAGCA CTGTATATCA CTGACTACAT GGGTTGGACT AACGAAGAGT TTGCTAGTGT GGCTGATGGT ATCCGAGGTG AATTTGCACG TAAGGGCGTG TTCATCGATG TAGAAGACAA CCCTATTTAC GCTTTAGGTT TAGATTACAA TCTACCGTTA GAGTCGGTAA AAGCTAAAAC TAGCTTGTGG TACTACTCAA TGGAAGATGT GTACAACCAG TATCATGTTA AATTAGATAT GAGCGGTGAA ATGGGTGCCG CCAACTGGTA TTTCATTCCG TCTTATTTAA AACAAGACTC TACAGGTCTG CTAGACCAAA GCGCTGCACA ATTCGACACT TACCAAGCAG GCTTCCATTT AGGGATGAAA TGGAACGGAT TTGATGCCAC ATTTAAGTAT GTGACCACTG GCGATGGCGA CGTAGTGGCT CCATTTGGCG ATGAAAAAGT GATTATTCAA CAAGTGGTTC AGTCATCACG TGCTAACGAA GACGGCTACG GTGCTCAACT CGCTTATAAT TTTTCACCCG ACTCAGCACT AAGCGGCGTT AGCACATATC TTAACTGGGC TAGCTATGAA ATTGATGGCG ACTCAAGCAA AGACATCGAC GAAACCGACT TTTCAGTGGT GTACGACCTG GCTAAATATG TCGACGGCCT GAGTGTACGC GCGCGTCACG CCATAGTTAA CTACTCAACT GACGACGACT TAACTGACAC TCGTTTTTAC GTCTATTATA AATTTGCTTT GTAA
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Protein sequence | MMMKTKLLPL VVACLAASPA FAAEPMANIF NDGSVKGQFQ LFDFQRNFDG ESTDRRDTSF GGLFYLRSGE ANGISFGSSF ASANPIWDAN DDGLYGLVGG GAPGSVVERT SVNRLQEYFV SGNWYDTKIV VGAQELRTPM MNPFPLRAIP FTYRGASIKN TSIENLGVSA LYITDYMGWT NEEFASVADG IRGEFARKGV FIDVEDNPIY ALGLDYNLPL ESVKAKTSLW YYSMEDVYNQ YHVKLDMSGE MGAANWYFIP SYLKQDSTGL LDQSAAQFDT YQAGFHLGMK WNGFDATFKY VTTGDGDVVA PFGDEKVIIQ QVVQSSRANE DGYGAQLAYN FSPDSALSGV STYLNWASYE IDGDSSKDID ETDFSVVYDL AKYVDGLSVR ARHAIVNYST DDDLTDTRFY VYYKFAL
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