| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfri_3678 |
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| Symbol | |
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| ID | 4280571 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella frigidimarina NCIMB 400 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008345 |
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| Strand | - |
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| Start bp | 4362530 |
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| End bp | 4363750 |
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| Gene Length | 1221 bp |
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| Protein Length | 406 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 638136491 |
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| Product | RND family efflux transporter MFP subunit |
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| Protein accession | YP_752344 |
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| Protein GI | 114564830 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0845] Membrane-fusion protein |
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| TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 20 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAGCTTA ACCGTGTAAA CGTCATCGTC ACTGTATTGT CACTGGGCAG TATTGCCGTT
GCGTTAGGCT ATACCGCAGC GCAGTTACCA CCTCCAGCGA ATAAAAAAGC GCCTACTGCT
GAACAGTCTG TCAAACCTGT CACGACTAGT GCGGCGGTAT CACTATTGCC GCAAGTGGGC
GTTGTTGTGG TTAATGGCCA AGAATATCAA GCAGAAGTGG TTGGATTTGG TGAAGCAAGG
CCACGTTATG AGCTAACACT TAGCGCCGAA GTCAGTGGCA AAATCACACA GGTTAATCGT
CAATTTGAGT CAGGACAGGT GATCAAAAAA GGGGCTTTGT TAGGTAAAAT TAACGACACC
AGTTATCAAC AAGCGTTAAC CCAAGCACAA ACCGATGTTG CTCAAGCGGA ACTCGATTTA
TTAGAAGAAC AACGCCAAGG TGAGCAAGCT AAAGCAGAAT GGCTTCGTTC AGGTTTGTCT
GGCGAGCCAG CCTCTCCACT AGTATTAAGA ACGCCGCAAT TAGCCCAAGC AACTGCGGCG
CTAGATAACG CCAAACAAGC ACTTAAAAAA GCGCAACAAG ACGTAAGTTA TACCCACATT
ACCGCACCGT TTGATGCGCT GGTGGTGAGC CGCGATATTC AGCCAGGCAG CTACGTGCAA
ACCGGCAGCC AGCTTGGCAC TTTATACAGC GTGGCCGAAG TTGAAATCAG CGTACCGTTG
TCTGAACTGC AATGGCAAAA CCTACCTGCA TTTGATAATG CACAGCTGGT TAAAGCGCCG
TGGGATGTGA CTTTGTTCAG CGCCGATGGT CTACATCAAT GGCAAGGTTA CATTGAACGT
GTCGAGCAAC ATTTAACTCA AACTAGCCGC CAACGTTCAT TAATTGTGGT GGTCGATAAC
CCACTGCTAC AAACAACGGA TCTGTATCCT GGCACCTTTG TTAAAGCACA TATTAACGGT
AAATCATTAA GCAATATATG GCAGTTACCT TCATCTGCTA TTTCACAACA AGGTGATATC
TGGTTTGTTG ACGACCAAGG GTTATTGGCT AAAGCACCTG CGACAGTCGC CTTTGAAAAA
GACGGTTTTG TATATGTGTC GCCCATTGTC ACTGAGCAAA CTAATGAGCA AAAAAATCAG
CCTAGTGTCA TGCAAATTGT TAAACGTCCT TTAAGCAGCT TTAAAGTCGG CACTAAGGTG
CTTGCTAAGG TAGAGGTGTA G
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| Protein sequence | MKLNRVNVIV TVLSLGSIAV ALGYTAAQLP PPANKKAPTA EQSVKPVTTS AAVSLLPQVG
VVVVNGQEYQ AEVVGFGEAR PRYELTLSAE VSGKITQVNR QFESGQVIKK GALLGKINDT
SYQQALTQAQ TDVAQAELDL LEEQRQGEQA KAEWLRSGLS GEPASPLVLR TPQLAQATAA
LDNAKQALKK AQQDVSYTHI TAPFDALVVS RDIQPGSYVQ TGSQLGTLYS VAEVEISVPL
SELQWQNLPA FDNAQLVKAP WDVTLFSADG LHQWQGYIER VEQHLTQTSR QRSLIVVVDN
PLLQTTDLYP GTFVKAHING KSLSNIWQLP SSAISQQGDI WFVDDQGLLA KAPATVAFEK
DGFVYVSPIV TEQTNEQKNQ PSVMQIVKRP LSSFKVGTKV LAKVEV
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