| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfri_3580 |
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| Symbol | |
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| ID | 4280473 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella frigidimarina NCIMB 400 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008345 |
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| Strand | - |
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| Start bp | 4250827 |
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| End bp | 4253511 |
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| Gene Length | 2685 bp |
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| Protein Length | 894 aa |
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| Translation table | 11 |
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| GC content | 44% |
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| IMG OID | 638136392 |
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| Product | TonB-dependent receptor, plug |
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| Protein accession | YP_752246 |
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| Protein GI | 114564732 |
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| COG category | [P] Inorganic ion transport and metabolism |
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| COG ID | [COG1629] Outer membrane receptor proteins, mostly Fe transport |
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| TIGRFAM ID | [TIGR01782] TonB-dependent receptor |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.0553281 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAAACCA AGCCGAGTTT TACCGTTAAT AAGTTAAGTC TTGCCATTAT CTCTGTGATT
TCTGCGGCGA CACTATTAAC AGCTACCCCC GTATACTCGC AAGAACCAGC GCCTGTTCGT
GATCCTGGTG AAGTGATTCC AATTGAACCG ATAGAAGTGA TTTCAGTTAC TGGGCGTTTA
CGTAGCTCTG CATCGGAAGC AACTGAAGAA CGTCGTGAAC AAATTGCTGT AGCCGATATT
ATGGGCTCAG AACAAATTTC AAGAACCGGT GACGGTGATG CAGCCGCAGC GCTTCGTCGT
GTGACAGGTT TAACCTTAAA AGATGGCAAA TTCATTTATG TTCGTGGCTT AGGTGAGCGT
TATTCAAGTA CCTCACTGAA TGGCGCGACA GTGCCATCGC CAGACCCAAC CCGTAACGTA
GTACCTTTAG ATATGTTTCC TGCATCGATC ATTGAATCAT TATCGGTGCA AAAGTCTGCC
TCAGCTAATT CACCTGCCGC ATTTGGTGGC GGGCATGTTG ATATTCGCAC TAAATCAATT
CCGGCCGACT TCTTCTTTAA AGCGTCAGTA GGCGGTCGTT ATAACACCAA TGACTCAAAT
GACAGCTACA CCTACAACGG TGGTGGCGAT GATTGGACTG GCCAAGACGA TGGCACTCGC
AGCATGCCAA GCAACATTAA TAACACCATT AATCAATATG GTGGAATTAG CCCAATTGAT
ATCGTCAGCA ACTCTAATGG CGCTATAAAT TACCCAGCAG CACAAAAAGT TAACCGCGAA
CTAGCACTAG ACATGTACCG CGATATGACG GTACACAGCC AAAGTACAGA CCCTGCAATG
CGCGGCGATA TCGCCATTGG TGATCGTTGG GACATTACCG ACGATATTAT CTTTGGTGCA
TTGTCAGCCG TGTCTTACAA GAAGCAAGCT GAAAACTACA CTAAACGTGA AGTTGAGCTT
GATGGTGATA GCAGCCAAGT ACAAGTTGAA AACCAGAAAG ACATCGTTGG TACCGACTCA
ATAGTCCAAG TGTCTGGCAT GCTTAACTTA GGCTTAGAGA TTGGCTACAA CCATAAAATC
GAAACCTTCA CTACTTACCT GCAAGACACT TCAGATGATG TGTCTATGGG GATTGAAGAA
ACCATCGATA CTTTGGGTGA GCCAAATGCA CTGCAAGTTT ACGCCATTGA TTATGAAGAA
CGTTCGCTTA TCAGTAACCA AATTAAAGGT CATCATTTTA TTGAATATTT GAATGACGCT
GAATTTAATT GGAAGTTCTC CGATGCGCGC TCAGAGCGTT ATGCACCAAA TGAAGTGTCG
TATACCTACA ACGTGATTTT AGACGACAGC AACCAGTTAT TATCACGTAA CCTCAATACT
CAAGATGCAC CCAAGTATGT CTACAGTCGC CTAGAAGATG ATAGCCAAAA CTATGCTTGG
GACTTTATGT ATCCAATTAA TCTAGACGGC GCCGTGGTTA AACTGACTAC CGGCTATGAA
TACTTTGAGC GTACTCGCGA AAGCTATGCA ACTCGCTTAG GGTTTGATGT CGATTTAAGT
CCAACCGATG CCAATGGCGC TATTTTAGCG GGTGATTTTG ATGAGATTTT CTCTGATAAA
AACATTACCG ACAATACCTT AGGGCTAGAG CTGAAAGACG CATCAACTGA CACTGAAGAC
TACATTGCCG CCGAGAAAAA CGACGCTGCA TTTGTGAGCA TGGACATCGA CTTTGACGAT
GTTTGGCGCG TCTATGCTGG TATTCGTTAT GAAGATTTTC GTCGCGTCAC TTTGCCTATC
GACCCCAATG GTGAAATATC AGATGAAGGT GGTCGTTATC AGTTATCTGA CTACGTGATA
GCAGAAGACG GTTGGTTCCC ATCGTTGTCA TTAACCTGGA AACAAACCGA CACCACCCAA
TGGCGTTTTG GCGCGAGTAA AACCATTGTA CGACCAGATC TACGTGAAGT GTCACCGGTT
CGATTCCAAG ATCCAGTTAC TGGTTTTGAC TTCTTCGGTA ACCCAGAGTT AAAGAGTTCA
GACATTCTTA ACTTAGATTT ACGTTGGGAA TACTATTCTG ATTCGGGTAA TAATTTCAGC
ATGGGCGCAT TCTATAAAGA TGTAGATGCA CCGATTGAGC CGATTCAACG TATTTCAGAA
GCAGGGCGTC AGCTCAAGTT TTATAACGCG CAGTCGGGTT ATGTGTACGG TCTTGAAACC
GAGTTCTTAC AAGAGCTTGA GTTTTTGGGT CGCGATGGCA GCATTTGGGA AGACTTCTTT
GTTGCGGGTA ACTTAACTCT AGGTGACTCA GAAATCGATA TCGCTGCTAA CGGCGAAATT
GACCCAACCA ATAAAACGCG CCGCATGACC GGACATTCAC AATGGGTGGC TAACTTACAG
TTAAGTTACG ACTCGTCAGA CAGTTATCAC AGTGCCACAT TAGTGTATAA CGTGTTTGGT
GAACGTATTG CTTATGGTGG CCGTGGTGGT TTAGACGATG TATTTGAAAA GCCATTCCAT
AGCCTTGATT TTACCTATAG TTTCTTCCCG ACAGATAGCG TTACGGTAAA AGTAAAAGCG
AAAAATATCT TAGGTGAAAC CACTGAATAC GAACAGCAAG ATCTGCAAGT GTACGCTAAA
GACCCTGGCA CAGAGTTCAC TTTGCAATTT AGCTATGAGT ATTAA
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| Protein sequence | MKTKPSFTVN KLSLAIISVI SAATLLTATP VYSQEPAPVR DPGEVIPIEP IEVISVTGRL
RSSASEATEE RREQIAVADI MGSEQISRTG DGDAAAALRR VTGLTLKDGK FIYVRGLGER
YSSTSLNGAT VPSPDPTRNV VPLDMFPASI IESLSVQKSA SANSPAAFGG GHVDIRTKSI
PADFFFKASV GGRYNTNDSN DSYTYNGGGD DWTGQDDGTR SMPSNINNTI NQYGGISPID
IVSNSNGAIN YPAAQKVNRE LALDMYRDMT VHSQSTDPAM RGDIAIGDRW DITDDIIFGA
LSAVSYKKQA ENYTKREVEL DGDSSQVQVE NQKDIVGTDS IVQVSGMLNL GLEIGYNHKI
ETFTTYLQDT SDDVSMGIEE TIDTLGEPNA LQVYAIDYEE RSLISNQIKG HHFIEYLNDA
EFNWKFSDAR SERYAPNEVS YTYNVILDDS NQLLSRNLNT QDAPKYVYSR LEDDSQNYAW
DFMYPINLDG AVVKLTTGYE YFERTRESYA TRLGFDVDLS PTDANGAILA GDFDEIFSDK
NITDNTLGLE LKDASTDTED YIAAEKNDAA FVSMDIDFDD VWRVYAGIRY EDFRRVTLPI
DPNGEISDEG GRYQLSDYVI AEDGWFPSLS LTWKQTDTTQ WRFGASKTIV RPDLREVSPV
RFQDPVTGFD FFGNPELKSS DILNLDLRWE YYSDSGNNFS MGAFYKDVDA PIEPIQRISE
AGRQLKFYNA QSGYVYGLET EFLQELEFLG RDGSIWEDFF VAGNLTLGDS EIDIAANGEI
DPTNKTRRMT GHSQWVANLQ LSYDSSDSYH SATLVYNVFG ERIAYGGRGG LDDVFEKPFH
SLDFTYSFFP TDSVTVKVKA KNILGETTEY EQQDLQVYAK DPGTEFTLQF SYEY
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