| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfri_3551 |
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| Symbol | |
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| ID | 4280444 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella frigidimarina NCIMB 400 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008345 |
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| Strand | - |
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| Start bp | 4220330 |
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| End bp | 4221499 |
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| Gene Length | 1170 bp |
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| Protein Length | 389 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 638136363 |
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| Product | O-succinylhomoserine (thiol)-lyase |
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| Protein accession | YP_752217 |
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| Protein GI | 114564703 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0626] Cystathionine beta-lyases/cystathionine gamma-synthases |
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| TIGRFAM ID | [TIGR02080] O-succinylhomoserine (thiol)-lyase |
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Plasmid Coverage information |
| Num covering plasmid clones | 19 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGACTAAGC ATCAAAGCGC CACATTGGCC GTTCGCCAAG GTATTGAAAC AGACACACAA
CATGGTGCTA TCGTGCCACC GATTTATTTA TCGACCAATT ATTCATTCGA TGGCCACAAT
AATCCGCGCG AGTTTGATTA CAGTCGCTCG GGTAACCCTA CTCGATGTAT TTTAGGCGAC
GCACTCGCCA AACTTGAACA AGGTGCAACC GGTGTAGTGA CATGTACCGG CATGGCCGCG
ATTACATTGG TGACTAGCTT ACTTGGTCCT GATGATTTAT TGGTTGTGCC GCACGATTGT
TATGGTGGCA GTTACCGCTT ATTCACTAAC TTGGCCAAAA AAGGCCAATT TAAGTTATTG
GTCGTTGATC AAACTGACGC ACAAGCGCTG AGCAAAGCAA TAGCTCAAAA ACCGAAAATG
GTGTGGTTAG AAACGCCATC GAATCCTTTA TTGCGCGTGG TCGACATTGC TGCCATTAGC
CAAGCTTGCC ATGACGTTGG CGCGTTAGTA ACAGTCGATA ACACCTTTTT ATCGCCGATA
TTACAGCAGC CATTGTTATT GGGTGCAGAC ATTGTTATTC ACTCAACCAC CAAATACATC
AATGGTCATA GCGATGTGGT CGGTGGGGCT GTAGTCGCTA AAGATCCTGA AGTGGGTGAG
TTGTTACATT GGTGGTCAAA TACTCTTGGG CTTACGGGTT CAGCATTTGA CAGTTATTTA
ACCTTGCGAG GCTTACGTAC TTTAGCGGTA CGAATTCGTG AGCATCAACG TAACGCACAA
AAGATTGTTG AGTTACTCAA CGCCAGTGAT GTAGTGGCAA AGGTGTATTA TCCGGGTTTA
AAAGACCATC CAGGTCACGA AATTGCGGCA AAACAACAAC AAGGCTTTGG TGCTATGTTA
AGTTTTGAGT TAATCGGCGG CGAAGCGGAA GTGGTGGCAT TTTTAAAGGC GCTGTCGTTG
TTTAGTGTTG CCGAAAGTTT AGGCGGGGTG GAAAGTTTAG TCGCCGTTCC GGCCACTATG
ACCCATAGAG CAATGGACCC ACAAGCAAGG CAAGAGGCTG GTATTAAAGA GACTTTATTG
AGACTATCTG TCGGTATTGA AGATGCAGAT GACCTCTTGA CCGATATTCA AGCAGGCCTA
GCAGCTGTTG CAGCGATAAA ATCAGCTTAA
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| Protein sequence | MTKHQSATLA VRQGIETDTQ HGAIVPPIYL STNYSFDGHN NPREFDYSRS GNPTRCILGD
ALAKLEQGAT GVVTCTGMAA ITLVTSLLGP DDLLVVPHDC YGGSYRLFTN LAKKGQFKLL
VVDQTDAQAL SKAIAQKPKM VWLETPSNPL LRVVDIAAIS QACHDVGALV TVDNTFLSPI
LQQPLLLGAD IVIHSTTKYI NGHSDVVGGA VVAKDPEVGE LLHWWSNTLG LTGSAFDSYL
TLRGLRTLAV RIREHQRNAQ KIVELLNASD VVAKVYYPGL KDHPGHEIAA KQQQGFGAML
SFELIGGEAE VVAFLKALSL FSVAESLGGV ESLVAVPATM THRAMDPQAR QEAGIKETLL
RLSVGIEDAD DLLTDIQAGL AAVAAIKSA
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