Gene Sfri_3494 details

Gene Information

• Locus tag: Sfri_3494
• ID: 4280388
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Shewanella frigidimarina NCIMB 400
• Kingdom: Bacteria
• Replicon accession: NC_008345
• Strand: -
• Start bp: 4155751
• End bp: 4159269
• Gene Length: 3519 bp
• Protein Length: 1172 aa
• Translation table: 11
• GC content: 40%
• IMG OID: 638136307
• Product: phage integrase family protein
• Protein accession: YP_752161
• Protein GI: 114564647

Plasmid Coverage information

• Num covering plasmid clones: 11
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAGTAAAT ACGCCACGAT AGAAGAAGCT TCAAGAGCAG CTATTAAGCT TGGCATTAAA 
TCGCTTCCTG AGTACAAAAA GCATTATAAA GCAGACCCTA GGCTTCCCAG TCATCCTTAT 
AAAATCTATC AGGATGACTG GGAGGGGGTT GGCAAATGGC GAGGTTTTTT CGGTAATGAG 
ATCCACGATT TTTACTCCAC ACTTGAGGAG GCTTCGAAAG CTGCTGTTAA GCTTGATATT 
AAAACAGGCC CTGAGTACAG AAGGCGCTAT AAATTAGACC CTAGGCTTCC TAGTTCCCCT 
GATAAAATCT ATCAGGATGA CTGGAAGGCG TTTGGCAATT GGTATGGCTT TTTGGGTAAA 
GACGCTCCTA GCTTCTATTC CACAATTGAA GATGCTTCAA AAGCCGCCAT TAGGCTCGGT 
ATCAAAACAT GTCCTGAGTA CAAAAAACGC TACAAATCAG ACCCTAATCT TCCCAAAACC 
CCAAATAACG TTTACCGCGA TGAATGGCCG GCATTTGGCA AGTGGCGTGG GTTTTTAGAT 
AATAAAATCC CTGATTTTTA CCCCACAGTT GAAGATGCTT CAAAAGCCGC CATTAAGCTC 
GGTATTAAGA CAAGTCGAGA GTACAGAAAG CGTTATAAAG AAGACCCAAG GCTTCCTAAT 
AGCCCTGCTC ATACTTACAG AGATGACTGG CGGGCACTGG GTGGAATGTA TGGTTTTCTA 
GATACTGATA TTCCAGAATT TTACCCTACG ATTGGATCCG CATCAAAAGC TGCAATTAGG 
CTCGGTATTA AAACACGTCC TGAGTACAGA AAGCGTTATA ACGAAGACTC TTGGCTTCCT 
AGTTGCCCTG AACAAACATA CCGAGGTGAC TGGCCGGAAT TTGGTAAATG GCGAGGATTT 
TTAGGCAATA GTATTCCAGC GTTTTACTCT ACAGTTGAAG CCGCTTCAAA AGCTGCTATT 
CAGCTCTGTA TTAAGTCGCG TACTGAGTAT GAGAAGCGCT ACAACGAAGA CCCTAGGCTT 
CCAGCTTCTC CAGCTTGTGT TTATCGAGAT AGCTGGAAGG TGTTTGGTTC ATGGTATGGT 
TTTCTGAACC AATCAAAGCC TTATTCTCTT GCGGATGTAA GCTTGGAATT TAATGGTTGG 
AGAGATTTAT TTGACTCATA TATAGAGCAA TCTCAGCGTA ACATTACAAT GAAGAAAAGA 
ACTAGTATTG GTTTTATCTG CAAATTCATT ATGGAAAATA ATTACCCATC AAAACCAGAG 
GAATTCCTGC TTAAAACAAC AAAGGTTAAT AATAATCAGT ATGAGGAGTT CCTTAAGTTT 
TTTGGCGAGA AAAGTAAGTC TCACTTCCAC GTAATCATTC TTGAATTCCT TGATTATTGT 
CTTTCTCAAT TGTGCACATT CGAAGACGAA GACGAAGTAT TAATTCATCC TGATTTTCGT 
AATCCATTAA GTCGATTTCA AAGCCCTTTG CTGGACATTA AACCCAATAA ATTATCTGAA 
TCTGATAAAC CTCTTTTAGC TTATACTTAT GTGGTTAAAG CAAGAGAGTG GATCTTGCCA 
ATAGAATCCA AAAGCCTAAG TCATTTAAGT CATTTACACG ACTTGATGGA AAGTGATTGG 
TTTGACGTAG ACTCTTCGCT AATTGATAAA AATGATCTAG ATTGTGTCTA TAGGTATGTA 
GAAAGAGACC GTCGAAAAGG AAAACATACA GGTGAGTTAG TCGGGAGCTA TAACGAAAAA 
GTCTGTCAAA TGTGGTCTCC TGTTCGTTTT TTTGCCTTAT ATACTTTATT GAGTGTCCCA 
GCTCGAGGGC AACAGATTCT CTGGTGCGAT AGCGGAGAAG CAGATAAAAA AGTTCCCGAG 
CTGGTGAATG GTAAAGTCGA GTGGGTCGCG AATAAAGGGC CCTTAGCAGG ACAGACAAAA 
AAGCAAGGTT TTATAAAGGA ATATTCAGGA AGTGAGCTGG GTTTATATTT TACTACCAAT 
AAAACATCGC GTCAGGAGGG CGGCTACGAT ATACCTTGGG CTCCTGATAA TTTAGATTAT 
TGGATGATTA AACTTAGACA TTGGCAGTCC AAATACAATG CTATTGCTGA GCCTACAAAA 
TGGACAGGGC TTACATTGAG AGTTCCCATT GGAAATAGGA TTTTAGAACA ACGAGGTGCC 
AATTGCTTTT TATTTAGAAT GGGTAATAGT TGCCAACCTC ACCAGCAGCC CATTTTCTCT 
AAGGCACTTG CTTATGTTCT GCATCAAATA GAAGACAAAG ATAACCTATT AACAAATAAA 
GTTAATGCTA AAGAGAGTGT GGGTTCGTAC AAATCAGACT ATACACCTCA CGCAATGCGC 
GTAAGCTTAA TTACAGCATT TGTTGTTGAT GCAAAAGTGC CTATCCATAT TGTTCAAAAG 
TTGGTTGGCC ATGCAAGGTT AGTTATGACG ATTTATTACA CTAAGGTAGG TCATGCTGAA 
ATGCGTGATG AACTTAATGC AGCAGATAAA CGAGCTTTAG CCGTTGCGCC ACTGAGAGTT 
CAGCAACAAA TTAGAAATAA ACAATTTGAA GCAGTAAGAG ACTCATTGGT TCCGAACGAT 
CTATTAGCCT TTAAATATTT AAATAACAAT CATCCAGCTT CAGCATTTTC TTTCACCGAT 
ATAGGTATAT GCCCTATGGG TGGTGGGAAA TGTGATCAAG GAGGGGAGGT TGAAAATAGT 
GAAGTCAAAA TTAAAAAGTA TTTACCCGTA GCGTCTGGGC ATCTGGGTGA AAAAAACTGT 
ATCCGTTGCC GTTTTTTTAT CACAAGCCCT GCTTTTTTAG GCGGTTTAAC CGCTGTATTT 
AACGAAATTT CATTAAAGCA GTTTTATATT AAACAAAAAG AACAGAATCT AATTCTTCAT 
ATTGAGTCAT TAGAGGATGA ACGTTATGAC GCTGAAAAAA AGGATCAGGT GTTCACTAAA 
TCAATGGAGT TGGATAAAGC GGCATCAAAC CTTGAAATGA TAGCTAAAGA AACGTGTATG 
TATGCGACTG ATACAGTGCA TATTGTACGG CTTATTATGC AGTGTACCAA CTTATTGAAC 
CAGTCCATTG AAGCGGAGGA AGGTACAGGA ACTATGTTAG TTGCTAATAC AGAATCTTCC 
TCTATTAACT GGAGTATTGA TGAAACTAAT AGCGAGTTTC ATCAGCTAAG CACTGTGTGT 
GAAAATGCAA CTATTTTTAC ACTAAGTGAT GCATCATTGG CCAATGCTAG GCGCTCTCAA 
TTAATTGACA AGATGGCGCA CCAAAATGGC ATTCAGCCAT GGTTGTGCAT GCTCTCCCCT 
GACCAGCAGC TAGAAGTGGG GAACCAAATG AGTGAGCTAT TAAAGAGTCG TTTAAAGTCG 
TGGGAAAATG TTGAAAAACT GATGAGAGCA GAGATCCTTT TAAGTGATTT TAATGATGAT 
AATCAGCTCA CGCCACTTCA TGATGAGGTA AAGAAGATCT TACTCGGAAG CCAACTGACT 
CAACTGGACG TTAACAAGTC TTTATTGGAG GCAATATGA 

 

Protein sequence

MSKYATIEEA SRAAIKLGIK SLPEYKKHYK ADPRLPSHPY KIYQDDWEGV GKWRGFFGNE 
IHDFYSTLEE ASKAAVKLDI KTGPEYRRRY KLDPRLPSSP DKIYQDDWKA FGNWYGFLGK 
DAPSFYSTIE DASKAAIRLG IKTCPEYKKR YKSDPNLPKT PNNVYRDEWP AFGKWRGFLD 
NKIPDFYPTV EDASKAAIKL GIKTSREYRK RYKEDPRLPN SPAHTYRDDW RALGGMYGFL 
DTDIPEFYPT IGSASKAAIR LGIKTRPEYR KRYNEDSWLP SCPEQTYRGD WPEFGKWRGF 
LGNSIPAFYS TVEAASKAAI QLCIKSRTEY EKRYNEDPRL PASPACVYRD SWKVFGSWYG 
FLNQSKPYSL ADVSLEFNGW RDLFDSYIEQ SQRNITMKKR TSIGFICKFI MENNYPSKPE 
EFLLKTTKVN NNQYEEFLKF FGEKSKSHFH VIILEFLDYC LSQLCTFEDE DEVLIHPDFR 
NPLSRFQSPL LDIKPNKLSE SDKPLLAYTY VVKAREWILP IESKSLSHLS HLHDLMESDW 
FDVDSSLIDK NDLDCVYRYV ERDRRKGKHT GELVGSYNEK VCQMWSPVRF FALYTLLSVP 
ARGQQILWCD SGEADKKVPE LVNGKVEWVA NKGPLAGQTK KQGFIKEYSG SELGLYFTTN 
KTSRQEGGYD IPWAPDNLDY WMIKLRHWQS KYNAIAEPTK WTGLTLRVPI GNRILEQRGA 
NCFLFRMGNS CQPHQQPIFS KALAYVLHQI EDKDNLLTNK VNAKESVGSY KSDYTPHAMR 
VSLITAFVVD AKVPIHIVQK LVGHARLVMT IYYTKVGHAE MRDELNAADK RALAVAPLRV 
QQQIRNKQFE AVRDSLVPND LLAFKYLNNN HPASAFSFTD IGICPMGGGK CDQGGEVENS 
EVKIKKYLPV ASGHLGEKNC IRCRFFITSP AFLGGLTAVF NEISLKQFYI KQKEQNLILH 
IESLEDERYD AEKKDQVFTK SMELDKAASN LEMIAKETCM YATDTVHIVR LIMQCTNLLN 
QSIEAEEGTG TMLVANTESS SINWSIDETN SEFHQLSTVC ENATIFTLSD ASLANARRSQ 
LIDKMAHQNG IQPWLCMLSP DQQLEVGNQM SELLKSRLKS WENVEKLMRA EILLSDFNDD 
NQLTPLHDEV KKILLGSQLT QLDVNKSLLE AI