| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfri_3480 |
|---|
| Symbol | |
|---|
| ID | 4280376 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella frigidimarina NCIMB 400 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008345 |
|---|
| Strand | - |
|---|
| Start bp | 4141564 |
|---|
| End bp | 4141971 |
|---|
| Gene Length | 408 bp |
|---|
| Protein Length | 135 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 42% |
|---|
| IMG OID | 638136295 |
|---|
| Product | TetR family transcriptional regulator-like protein |
|---|
| Protein accession | YP_752149 |
|---|
| Protein GI | 114564635 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 26 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTCTAACC AGAAAGAAAA GTCGACACAT AAAGCGGTAA GACTTGCCAT TATTCGCATA
GAAAAAGCTC GGCCTAATGT TGTCTCTGAT AAGCGTAAAA TGAGTGTTGC TGCCGTTGCC
GAAGAAGCTG GCGTAAGCCG AGCGTTGATT CATCGCGATT GCCCTGACCT GTTAGAGCGT
ATTAAAGGTG GTGTGAATAA AGCTATTCGA CAGCAGCGTG ATGCCAAGCA AATTGAGCTG
AATGAATACA AAGAGCGCAA TCGAGAACTT CGAACTGAGG TCGAGGAGTT AAAAGCCATG
TTATCTAAGG TTCAATCGCA AAACGCTACG TTAATACGGA AAAATATGGT GTTAAGTGGT
GTTAGTGCTA AAAACAGCAA TGTTACACAG TTATATTGTA GTAAGTAA
|
|---|
| Protein sequence | MSNQKEKSTH KAVRLAIIRI EKARPNVVSD KRKMSVAAVA EEAGVSRALI HRDCPDLLER
IKGGVNKAIR QQRDAKQIEL NEYKERNREL RTEVEELKAM LSKVQSQNAT LIRKNMVLSG
VSAKNSNVTQ LYCSK
|
|---|
| |