Gene Sfri_3241 details

Gene Information

• Locus tag: Sfri_3241
• ID: 4280143
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Shewanella frigidimarina NCIMB 400
• Kingdom: Bacteria
• Replicon accession: NC_008345
• Strand: +
• Start bp: 3878141
• End bp: 3878653
• Gene Length: 513 bp
• Protein Length: 170 aa
• Translation table: 11
• GC content: 46%
• IMG OID: 638136059
• Product: peptide deformylase
• Protein accession: YP_751916
• Protein GI: 114564402
• COG category: [J] Translation, ribosomal structure and biogenesis
• COG ID: [COG0242] N-formylmethionyl-tRNA deformylase
• TIGRFAM ID: [TIGR00079] peptide deformylase

Plasmid Coverage information

• Num covering plasmid clones: 10
• Plasmid unclonability p-value: 0.00399502
• Plasmid hitchhiking: Yes
• Plasmid clonability: hitchhiker

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGCAGCCAA AGCCACTACT CAGCATTGCT ACCACAGGCG AACAGATACT GACTCAAATT 
GCTGAGCCAG TGACGGTGTT TGACGACGCA TTACATACCT TAGCCGATAA CATGCTCAGC 
ACTATGCTGA ATGCTAACGG GGTCGGTATT GCAGCAACGC AAGTATTCAG TAACGCTGCA 
ATGTTTATCA TGGCGTCAAA TCCAAACGAA CGTTATCCCG ATGCGCCATC AATGCCTCCA 
ACGGTAGTCA TAAACCCACA GATTCTATCG GCATCTGCCG CGACAGAAGC TGATGTAGAA 
GGTTGCTTAT CCATTCCAGG TCAGCGGCTA TCTATTGCGC GACACAGCGA AATAGAAGTT 
CAGTATCAAT CGCTTGATGG TCAGTTACAT CAACAAACAT TAACGGGATT TGTTGCGCGT 
ATTTTTCAAC ATGAATATGA CCACCTGCAG GGTATTACTT TACTTGAACG GGTCAACATC 
ATGACACCTC AGATACTGGT GCCACAATGT TAA 

 

Protein sequence

MQPKPLLSIA TTGEQILTQI AEPVTVFDDA LHTLADNMLS TMLNANGVGI AATQVFSNAA 
MFIMASNPNE RYPDAPSMPP TVVINPQILS ASAATEADVE GCLSIPGQRL SIARHSEIEV 
QYQSLDGQLH QQTLTGFVAR IFQHEYDHLQ GITLLERVNI MTPQILVPQC