Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sfri_3138 |
Symbol | |
ID | 4280041 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella frigidimarina NCIMB 400 |
Kingdom | Bacteria |
Replicon accession | NC_008345 |
Strand | - |
Start bp | 3755917 |
End bp | 3756867 |
Gene Length | 951 bp |
Protein Length | 316 aa |
Translation table | 11 |
GC content | 44% |
IMG OID | 638135957 |
Product | transcriptional regulator, LysR family protein |
Protein accession | YP_751814 |
Protein GI | 114564300 |
COG category | [K] Transcription |
COG ID | [COG0583] Transcriptional regulator |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 16 |
Plasmid unclonability p-value | 0.27318 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAATGTAT CTCGTATCGA CTTGAACCTC CTTGTTTATT TAGATGTTTT ACTGCGTGAA AGAAACGTGA CTAAAGCTGC AGACCAGCTT GGGATCAGCC AGCCTGCAAT GAGTAACGGC CTAAAACGCT TACGAAACTT GTTTGACGAT CCCTTACTTA TTCGCACGAG TCAGGGCATG ACACCCACCG AACGTGCAAA TGAATTACAA CCCATTATCA GTGAACTGAT TATTGGGCTG GAAAAAGCCG TACAACCGCG TGCCAATTTT GATCCACTGG AAAGTGATAA AGTCTTCCGT GTTATGGCAA GTGATTATGC TGAAGCGACG TTAATTCCAC CGCTCATTGC TAAGCTTCGT ACTCAAGCAC CCAACATTAT TTTAGATATC ATGACCCCAA GTGATGTCAG TTTCCCTGAT GTAGAACAAG GAAGAGTCGA TATGGTGATC AACCGTTTCG ACAGTATTCC GCAATCATTC CATCAAAAAA TATTGTGGAG TGATGATTTT AGCTGCTTGA TTAGTAAGGG TAATCCTGTT TTAAAGAAGT TTTCTTTAGA CAGTTATTTA AAAGCTAAGC ATGTGTGGGT GAGTAAAACA GGGATGGGTG TTGGGGTAGG GATGAACCCT GATGATGTTC AGCGTTTGGG CTGGGTAGAT GAAGCATTAA CTCGAATGGG TGTGAAACGC CAGATCACCG TTTTTACACG CCATTATCAA GCCGCCTGTT TGTTGGCTGA GCAACAAGAT TTGATCGCAA CCATACCAAG TAAGATGGCT CGTCATCACA TCAATAATGA ACGGGTGAGC ATTGTTCCGC CGCCTTTTAT TATTCAACCC ATCGCCTTGA CTATGGCCTG GAGCCCTTTG CTTCAGCATA ATCCCGCGCA TCAATGGATG CGACAACTGA TCACTAAAAC CGCAGAAGAG ATAAATAGAG GGGATGTTTA A
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Protein sequence | MNVSRIDLNL LVYLDVLLRE RNVTKAADQL GISQPAMSNG LKRLRNLFDD PLLIRTSQGM TPTERANELQ PIISELIIGL EKAVQPRANF DPLESDKVFR VMASDYAEAT LIPPLIAKLR TQAPNIILDI MTPSDVSFPD VEQGRVDMVI NRFDSIPQSF HQKILWSDDF SCLISKGNPV LKKFSLDSYL KAKHVWVSKT GMGVGVGMNP DDVQRLGWVD EALTRMGVKR QITVFTRHYQ AACLLAEQQD LIATIPSKMA RHHINNERVS IVPPPFIIQP IALTMAWSPL LQHNPAHQWM RQLITKTAEE INRGDV
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