Gene Sfri_3018 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSfri_3018 
Symbol 
ID4279922 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella frigidimarina NCIMB 400 
KingdomBacteria 
Replicon accessionNC_008345 
Strand- 
Start bp3624789 
End bp3625505 
Gene Length717 bp 
Protein Length238 aa 
Translation table11 
GC content40% 
IMG OID638135838 
Producthypothetical protein 
Protein accessionYP_751695 
Protein GI114564181 
COG category[S] Function unknown 
COG ID[COG3904] Predicted periplasmic protein 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones35 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGTATTATC TACTGCTAGC CATGCTGCTA ACCTTAACTG GTTGCGCAAG TAAACAACCC 
TCTTTTAGTC TTGTTATCGA CCCCTTATTG CCCTCTGTCA TTAATTATAG CGGTGAAATT 
GATCCAGATA ATGTTGCCGC TTTTGAACAA GGCATAGCAA ATAGTCCAAC TCAAATAACC 
TCATTGGTTA TTAACAGTGG TGGGGGAGAT GTACTTGCTG GCATACGATT AGGTGAGTTG 
GTATATCAGC ACAAATTAAA GGTTACAGTT GATAAAGTCT GTGCATCATC GTGTGCTAAT 
TATGTTGTAA CCGCCAGTGA TGAAGTGACT ATAAAACAAG ATGCCCTGTT AGGTTGGCAT 
GGTGGGGTGT TACAACCACT CTTATACGGT TCGGAAGACT TCCATAAGTA CAAAAAAAGT 
ATGGTTGAAT ATATTATGGC GTGGGCAGAG GCCGAGCGCG TCTTTTTTGA CATGGTTAAG 
GTTAATCAAG CTGTCACGGT ATTGGGGATG ATGCCAGGCT TAAAAGGTAA ACGAAACACG 
CCATTATATA GTTATGACCA GCAAACGTTA AAGGCGTTAG GTTTACATAT CACTTTTGAA 
GACAAGCAAG CAACAGTTTC TAAAACCGGC GAAGAAATTG TACAAATATT TAGCTTAAGC 
CCTGAAGTAT TAGACACTTT ACTGCTGCAG CATGCACAAA GGTTACAGCA ATTGTAA
 
Protein sequence
MYYLLLAMLL TLTGCASKQP SFSLVIDPLL PSVINYSGEI DPDNVAAFEQ GIANSPTQIT 
SLVINSGGGD VLAGIRLGEL VYQHKLKVTV DKVCASSCAN YVVTASDEVT IKQDALLGWH 
GGVLQPLLYG SEDFHKYKKS MVEYIMAWAE AERVFFDMVK VNQAVTVLGM MPGLKGKRNT 
PLYSYDQQTL KALGLHITFE DKQATVSKTG EEIVQIFSLS PEVLDTLLLQ HAQRLQQL