| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfri_2956 |
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| Symbol | |
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| ID | 4279861 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella frigidimarina NCIMB 400 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008345 |
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| Strand | + |
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| Start bp | 3551164 |
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| End bp | 3553536 |
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| Gene Length | 2373 bp |
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| Protein Length | 790 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 638135776 |
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| Product | TonB-dependent receptor |
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| Protein accession | YP_751634 |
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| Protein GI | 114564120 |
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| COG category | [P] Inorganic ion transport and metabolism |
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| COG ID | [COG1629] Outer membrane receptor proteins, mostly Fe transport |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 22 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCCTATTT ATCGTTATCC TAGCCGTTCA CTTACCGCAC TAGCTATTAG CGTAGCCTTG
TATTCATCAA TAGCTTCATC AATGGCTGCT GCAGCCGAAG ACACCTCGTC TATCGAAGTC
ATTCAGGTAT CAGGTAAAGC GATTAACGAT AAAGGCATGT CACCTAAAAA CAGCACTGTT
GATGGCCCAT TTGGTGACGG AATAGCATTA AAAGATATTG CCCGTTCAGT GACGCCTATT
ACCAGTGAAA TGATTGAACA GCTTAATATC ATTGATTTAT CTGACATTCA AAAAGTCAGC
CCTAACAGTT ACTCCGCTAG CGGCTTTGGT GCATCAAGCC TACCCACTAT TCGAGGCCAA
CTAGGCGAGT TATATCAAGA CGGTGTGCGT CGCCAAGCGG GCAACAATGG TTTTGGTGTC
CCCATGTCGT TTAACGCTGT CGAACAAATT GATGTGGTAA AAGGCGCACC GCCAGTGCTA
TTAGGCACCA GCCAGCGTAA TGGTGGGTTT GTTAACATAC ATTCTAAAGT CGCGCCTACA
GACGATCAGT TTGCTCATCT CACCTTATCG GGCGGTAGCT GGGATCATTA CCGTGCACAA
ATAGATGTTG GTACCGACAT CGTACCCAAT GAAAGCGGTA TTCGCTTGAG TGCAGAACAT
ATCGATAATG GCAGCTATTA CGATTACTCA GGCTTTAAAA GCGATAGTAT TTTTGTTGCA
TTTAGATTGT TGCCAGACGA TGTCAGCACC TGGGACATTA ATGTCGAATA CTATGATGTT
GAGTTTACCG ACAACGCGGG GATCAACCGC CCGACTCAAG CGTTAATCGA CAACGGTTTG
TACGTTACAG GCCAAGGTGT GCAGCCTAAT GGCAGCACTA TAGCTGGCGC CAATGCCATC
GTATCGCCAA CCGGGTTAGT TGAGATAGAC CGTAGCCAAG TATTAACCGA CCCCGACAAT
ATCAATAACG CCCAAACCTT TTTACTTCAC AGCACCTATG TGCGTGAACT AAGCGATAAA
GCGACCTTTA AAAATATTAC CTATTATCAG CATCTAGAAC GTGAAGAAAT TGCTCAAAAC
AGTTTTGTTG AAATTATTGA TGGCGCAGAT ACCGCCCAAA ATAGAGTTGA ATTGGCCTAT
CAGTGGAACG ATGCTCAAAG CACCATTACT GCTGTCGATA TTCGTTATAA CAAAGTATTA
GGTTACAGCC AATTTACCAC CGAAGCGGAC TTACCTATCG ACTTAACGGG TCCAATTGAA
AACCGCCGTA TTCCGCTTAC TGCTGAGCAA CAAGGTCGAT TAGTTGAACT GCGCCCAGGT
GTGTTTGTAT CTCCCGGTGC TCAGTACGAT ACCAATGCCG ATGGCAGCGG CGACTTTTCA
TTGTCAGACA CCACTGACTC AACCAGTTGG CAAACGGGTT TAGCCATTCA ACATAACAGC
CAATGGACAG AGAAGTTCTC GACCAGCGTA GGTTATCGTG CCGATGTTTA TAATGTAGAT
GCGCGTGATG CCATTGCTCC AAAAGGGCAA GTTGCAGCCA GCGATTCAAT AAGTGAAATG
CTTGAATCTG GCCAAGTCAG TTTGAGCTAT CGCCTTAGTG ACGATATCAC TACCTATGCC
AGTGCCAGTT ATAACGAATC AACCTCAAAC AGCATGGCTG GCGGCACCAC ATTAGGCGCC
AACAACCAAA TTAGTAGCCA AAACTTTGCC ACCGAAAATA CCCTGACTGA AGTGGGCATT
AAGTACTCAC CCACGGACAG TGCTTGGTAT GTTGATGCGG CAGTGTTTGA CCAAAAACGC
AGTCTACGAA ATCGTGATGG CAGCAATACC GGCATTCGCA CTAAAGGCTT TGAAGCCCAA
GCCTTTTATG ATGCTGACCC GTTTTGGTTA AGCGCGGGCT ACAGTTATTT AGACGCCCGT
TATGATGACT CAGCCAGTAG CCAAGATACG GTACAAGTTG CCGATACATT TGATAATTCA
CGCCCAGACA TTATTGCTGG CACAGGTATT GGCGCACCAA ACTTCGCTTC ATTTGCAGCG
TCGGACCGCC GTGTACAAGG CCTTCCTGAA CAAACGTTCA CAATTAATGG CGGAATGTCG
ATTACTGAGA AATGGAAAGC AGGTTTCTCC GGTCTATATA CCAAGAGTTA CCCATTAGAC
TATTTAGCGA CTGTGTATAT TCGCGATCAA TACACGCTTA ACGTTAACAC TCGCTATGAT
TTTACCGAGC AAACAAGTTT AAGGCTGGAT GTGAATAACG TGACTAACCA AAAGAACTGG
CGTCCGGTGT TTGAAGGCGG TTATTTCGGA TCAACATTGG TTTATCCTGA ACTACCTGTT
AACGCTACCC TTACCTTACA GCATTCATTT TAA
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| Protein sequence | MPIYRYPSRS LTALAISVAL YSSIASSMAA AAEDTSSIEV IQVSGKAIND KGMSPKNSTV
DGPFGDGIAL KDIARSVTPI TSEMIEQLNI IDLSDIQKVS PNSYSASGFG ASSLPTIRGQ
LGELYQDGVR RQAGNNGFGV PMSFNAVEQI DVVKGAPPVL LGTSQRNGGF VNIHSKVAPT
DDQFAHLTLS GGSWDHYRAQ IDVGTDIVPN ESGIRLSAEH IDNGSYYDYS GFKSDSIFVA
FRLLPDDVST WDINVEYYDV EFTDNAGINR PTQALIDNGL YVTGQGVQPN GSTIAGANAI
VSPTGLVEID RSQVLTDPDN INNAQTFLLH STYVRELSDK ATFKNITYYQ HLEREEIAQN
SFVEIIDGAD TAQNRVELAY QWNDAQSTIT AVDIRYNKVL GYSQFTTEAD LPIDLTGPIE
NRRIPLTAEQ QGRLVELRPG VFVSPGAQYD TNADGSGDFS LSDTTDSTSW QTGLAIQHNS
QWTEKFSTSV GYRADVYNVD ARDAIAPKGQ VAASDSISEM LESGQVSLSY RLSDDITTYA
SASYNESTSN SMAGGTTLGA NNQISSQNFA TENTLTEVGI KYSPTDSAWY VDAAVFDQKR
SLRNRDGSNT GIRTKGFEAQ AFYDADPFWL SAGYSYLDAR YDDSASSQDT VQVADTFDNS
RPDIIAGTGI GAPNFASFAA SDRRVQGLPE QTFTINGGMS ITEKWKAGFS GLYTKSYPLD
YLATVYIRDQ YTLNVNTRYD FTEQTSLRLD VNNVTNQKNW RPVFEGGYFG STLVYPELPV
NATLTLQHSF
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