| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfri_2948 |
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| Symbol | |
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| ID | 4279853 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella frigidimarina NCIMB 400 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008345 |
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| Strand | - |
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| Start bp | 3537758 |
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| End bp | 3538675 |
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| Gene Length | 918 bp |
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| Protein Length | 305 aa |
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| Translation table | 11 |
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| GC content | 41% |
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| IMG OID | 638135768 |
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| Product | transcriptional regulator, LysR family protein |
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| Protein accession | YP_751626 |
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| Protein GI | 114564112 |
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| COG category | [K] Transcription |
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| COG ID | [COG0583] Transcriptional regulator |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 0.190207 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGAAAAATC TTCCCAGCCT TAAGAACCTT TATTATTTGG TTCATTTACA TCAAGAGCAA
AATTTCAATC GTGCCGCTAA GATGTGCTTT GTGAGTCAAT CGACTTTATC TAGTGGTATC
CAAAATCTCG AAGAACAACT AGGCTATCAG TTGATTGAAC GTGATCATAA ATCGTTTATG
TTTACTGCCA TCGGTGAAGA AGTGGTTGAG CGAGCTCGAA ATATTTTAAC CAATGTCGAT
GACTTAGTTG AATTGGTTAA AAATCAAGGC GAACCGATGA CCGGAGAAAT TCGTTTAGGT
TGCATTCCCA CTATTGCGCC TTTCTTACTC AGTAGAGTGG TTAAGTTATG CCAGCAAGAC
TACCCCAAGC TCAGTTTGTT ATTAAAAGAA GACACGACTG AGCGTCTATT GGATGCTTTA
GCAAAAGGTG AGTTGGATTT ATTGATATTA GCGTTACCTG TCGACACAAG TGGTTTTCAT
AGCATGAAAG TTGGCATTGA TCCGTTTAAA ATGGTGATGC ATAAAGAGGT ATCGCAACAA
TTCTTGCAGC CCATTGACTA CCAAAAAATG CCAGACGAAA GTATCTTTTT ACTGCAAGCT
GAACATTGCA TTACCGGTCA CGCGATAACC GCATGTCAAC TGGGTGATAG CGCCAAAATT
AATCCTTTTG CGGCAACCAG TTTGCATACC TTGGTGCAGA TGGTTAACAG TAAGTTAGGC
ACCACATTTT TACCCCAAAT GGCCATCGAT ACTGGTATTT TAACTGATAC CGATCTTGTC
GCAATGGATC CTCCTGGTGA AGCTCCTTAT CGTGATATTG GTTTAGTTTG GCGTCAAACT
ACCAGCCGTA TTTCAACGTT TAGAACCTTA GGCTTAGCGA TTCAACAAAA GCTGCTAGCA
CAATCGTTAC CAAGTTAG
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| Protein sequence | MKNLPSLKNL YYLVHLHQEQ NFNRAAKMCF VSQSTLSSGI QNLEEQLGYQ LIERDHKSFM
FTAIGEEVVE RARNILTNVD DLVELVKNQG EPMTGEIRLG CIPTIAPFLL SRVVKLCQQD
YPKLSLLLKE DTTERLLDAL AKGELDLLIL ALPVDTSGFH SMKVGIDPFK MVMHKEVSQQ
FLQPIDYQKM PDESIFLLQA EHCITGHAIT ACQLGDSAKI NPFAATSLHT LVQMVNSKLG
TTFLPQMAID TGILTDTDLV AMDPPGEAPY RDIGLVWRQT TSRISTFRTL GLAIQQKLLA
QSLPS
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