| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfri_2947 |
|---|
| Symbol | |
|---|
| ID | 4279852 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella frigidimarina NCIMB 400 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008345 |
|---|
| Strand | + |
|---|
| Start bp | 3536536 |
|---|
| End bp | 3537558 |
|---|
| Gene Length | 1023 bp |
|---|
| Protein Length | 340 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 42% |
|---|
| IMG OID | 638135767 |
|---|
| Product | putative adenylate/guanylate cyclase |
|---|
| Protein accession | YP_751625 |
|---|
| Protein GI | 114564111 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG2114] Adenylate cyclase, family 3 (some proteins contain HAMP domain) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 8 |
|---|
| Plasmid unclonability p-value | 0.00299422 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGCTTCTT TCGTTTTTTT CCGCTACTCA CAATCATCGC AACTACCTGA ATGGGCTGTT
GGCAATGCCG ATCTCGCCAC GCTTGCCATA ATGATGGGTG TTGTATTTGG CGGCTTGCAT
TGGATGTCCA ATCTCATTGC CGATTTTAGC GCCATCAGTC GTTTACCTTA TTTATTTTCT
GTGGTGTTTA AAGGATTGTT TTTGCTACTT GGGGCAACAA CCCTGGCGTA CGTGACACAA
TTTTTAAACA TGTGGGCCAT TGAGAACCAT ATGGTGACAT TACGACAAAT GCTCACAGTG
CAGATTATTT ATAGCCCATC GTTTCAAGCG CTAGTGGTTT ATCTTGTTGT GGTCCGGGTA
AGCTTAGCTT TTATTGAACA AATGTCGTTG TTGGTTGGTC CTAAAGTCTT GCTCAATATT
GGCCTTGGCA AATATCACAA ACCACGTTAT GAGCAACAAT TGTTCTTATT TATAGATATG
GTCTCATCTA CAGCTCATGC CGAAACCTTA GGCGATTATC GCTTTAGCCG CCTAATTCAA
GACAGCTTTA GCATGTTAGC CGACACTGTG ACCGATAATG AAGCAGAAAT TTATCGTTAC
ATGGGTGATG CCGTACTTAT CCACTGGCCA TTAGAGCAAG GTATTAAACA AGACCGTTGT
ATGAATATCT ATTTCGAATT TTGCCAGCAA TTGCAGTGGC AAAGGCAATA TTTTGAACAA
CAATATGGTT TTGTGCCTAA ATTTAAAGCT GCGGCGCATT GTGGCCAAGT TGTAGCCGCG
GTAGTCGGTG TACATAAGCA AGAGATTAGT TTCTTCAGTG ATGTATTAAA TACCTTGGCA
CGGCTACAAG ACCAATGTAA TCCGCTCGGT CAACGAATGT TGCTATCTGG AGATGTTGTG
CATCGACTTG AGCAACAAAA TAGTCAGTAT GACCTGACTG ACTTAGGCCC TATCATGCTT
AAAGGTAAGA AACACCCAAC TGAAGTGTAT GGTGTTGCCC CAAGAAAATT GAATAACAAT
TAA
|
|---|
| Protein sequence | MASFVFFRYS QSSQLPEWAV GNADLATLAI MMGVVFGGLH WMSNLIADFS AISRLPYLFS
VVFKGLFLLL GATTLAYVTQ FLNMWAIENH MVTLRQMLTV QIIYSPSFQA LVVYLVVVRV
SLAFIEQMSL LVGPKVLLNI GLGKYHKPRY EQQLFLFIDM VSSTAHAETL GDYRFSRLIQ
DSFSMLADTV TDNEAEIYRY MGDAVLIHWP LEQGIKQDRC MNIYFEFCQQ LQWQRQYFEQ
QYGFVPKFKA AAHCGQVVAA VVGVHKQEIS FFSDVLNTLA RLQDQCNPLG QRMLLSGDVV
HRLEQQNSQY DLTDLGPIML KGKKHPTEVY GVAPRKLNNN
|
|---|
| |