| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfri_2885 |
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| Symbol | |
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| ID | 4279790 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella frigidimarina NCIMB 400 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008345 |
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| Strand | - |
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| Start bp | 3469192 |
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| End bp | 3470214 |
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| Gene Length | 1023 bp |
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| Protein Length | 340 aa |
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| Translation table | 11 |
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| GC content | 38% |
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| IMG OID | 638135705 |
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| Product | prepilin-type cleavage/methylation-like protein |
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| Protein accession | YP_751563 |
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| Protein GI | 114564049 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG4966] Tfp pilus assembly protein PilW |
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| TIGRFAM ID | [TIGR02532] prepilin-type N-terminal cleavage/methylation domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 0.248204 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAGCCATA TGATGAATAA ATTATCTATA AAACATCGTG GAATGTCTTT AGTTGAATTA
ATGATAGCCA TGCTTGTGGG GTTATTTTTA ACCGCGGGTA TCTTCACTAT GTTTAATATG
TCGTCAAGCA ATGTGACAAC TACCGGTCAA TTCAATCAGC TACAAGAGAA TGGGCGTATA
GCTCTGGCTA TTATGGAAAG AGATATCAGT CAGCTGGGTT TTTTTGCTGA TATAACTGGC
ACAGAACTTA TTGTGAATGT TAATTCTAGT AACTCAACGA CAGTTTTAAC ATCGGACTGT
GTTGGTGAGG GGGTTAATAA TGCAACTTTT CCTCAAAATG TCCCTGCTCA TTTTCGAAGG
CTATGGGGAA ATGAATATAC TAATTCGTTA ACTATGGTGT GTGGTGCGCC TCTCACTCCA
GACAGCAAAA CGGACATTAT ACAGGTGAAG AGGCTTGTTG GACCTTCCGT GTTAGCCGCT
CAGTTAGATG CAAACAGTTA TTATGCTTCA GTTACTGCTA ACGAAATTGA ATTCTTTAAT
GGCAGTGTAG CTACACCGCC AGTAAAATTA AATAGTCGTA TGTGGAAATA TCAACATAGA
GTCTATTTTG TGGAAACTGA TTCAGGTATC CCTGTATTAA AACGCCGGAG TCTTAATATT
TCAGGTGGCA TGTCAAACGA AGAGCAACTT GTTGAAGGTA TAGAGAATAT CCACTTTTTA
TATGGTTTTG ATAATGATGG CGACTCGACA CCAGATACCT TTATACCCGC GAAAAATGTG
TCAACTTTTA TGTGGGATAA TCAAGGTTTT CAACGTCTAG TTGCTTTAAG AATGTACGTA
TTGGTTCGAT CTATTCAGAT TGATCGTAGT TATGAAAATG ATGTGACCTA CACATTAGGT
GATAAAGAAA TATCGGGTTC AGTCAATCCA AATAAGAGTA ACGACACTGA TTATAAACAT
TATCGACGAA AGGTGCTGTC CACAACGGTG GTGTTAGAGA ATCCTGTATT GATTAGAAAT
TAA
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| Protein sequence | MSHMMNKLSI KHRGMSLVEL MIAMLVGLFL TAGIFTMFNM SSSNVTTTGQ FNQLQENGRI
ALAIMERDIS QLGFFADITG TELIVNVNSS NSTTVLTSDC VGEGVNNATF PQNVPAHFRR
LWGNEYTNSL TMVCGAPLTP DSKTDIIQVK RLVGPSVLAA QLDANSYYAS VTANEIEFFN
GSVATPPVKL NSRMWKYQHR VYFVETDSGI PVLKRRSLNI SGGMSNEEQL VEGIENIHFL
YGFDNDGDST PDTFIPAKNV STFMWDNQGF QRLVALRMYV LVRSIQIDRS YENDVTYTLG
DKEISGSVNP NKSNDTDYKH YRRKVLSTTV VLENPVLIRN
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