| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfri_2883 |
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| Symbol | |
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| ID | 4279788 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella frigidimarina NCIMB 400 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008345 |
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| Strand | - |
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| Start bp | 3465090 |
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| End bp | 3468704 |
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| Gene Length | 3615 bp |
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| Protein Length | 1204 aa |
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| Translation table | 11 |
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| GC content | 39% |
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| IMG OID | 638135703 |
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| Product | type IV pilin biogenesis protein, putative |
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| Protein accession | YP_751561 |
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| Protein GI | 114564047 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG3419] Tfp pilus assembly protein, tip-associated adhesin PilY1 |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTTCAGTA AGTATCCGAT TTTTATTATG TTATTTTCTG TATTGGGCTT TGTAGCTAAT
GCTGTTGCAG ATGATACCGA ATTATATGTT TTAGAGTCAT CTGTGCGCAG TGATGATAAT
CCTCAAGTGC TCATTATATT AGACACTTCA GGTAGTATGG GTAACACGAT GAGCGCAAGC
CCTTTTCTCG TTCAGCCTAA TCTTACTTCA GGCACCAAGC TGTATTATTC AACTAGTTCA
AGTACAGTGC CAACTGCCAA CAGTACTAAT TTTATTACTT ACAGTAAAAA TGGTTGTCAC
TCTTCGGTTG AATTTTTACA AAAATTCGGT ATTTATACGG GGTATTTTCG CGAATATAAA
GGCAGTAAAT GGCAAGAGTT TCCTGTAAGT GATGGAAGCA ATATTACCAA AGTAGATTGT
TATGAAGATA TTGCTGTGGG AGATACTACC AATGCAAGTG GTGTTGGTGC TGGTTACCCT
GTAGATGATT TAAGTGATGC CTATAAAAAT GATGGAAACG CGCTCAACAA TGCCAAGTTA
ACCGATTTTG GTCTCGGAGA ACCAATCACA TTGTTTACCC AGCAGTATGT GCAATGGTAT
TACAATAAGC CGGCAGCAAC TAATACGGAC AGAATTACAG TAGCCAAACG TGTATTAAAT
GAAGTGATTG TAAATACACC AGGTGTTGAT CTTGGTCTAA TGTTATTTAA TTATAATGCT
AGCGGTAGCA ATCGCTCTTC AGAAAATAAA GATGGTGGGC GAGTCGTATC AAAAATTAAC
ACTGGTAATA TTAATAATAA GAAAGCGTTA GCTTCTATCG TCAAGAACAC CATCGCAATA
AAAAGCAATA ATACACCATT GTGTGAAACC TTGTATGAAG CAGCATTATA TCTACATGGC
AAACCATTAG AGTATGGGCA TGATACTTAT GATTCAGTAG CTGCAACCCC TCTAAATAAA
ACATGGAAGT GGGTTAAAAA GTGGAATGGG TGGATAGAGG AGTCAACACC AGTAAATCCT
GCTCAATATA ACCCTGGTTA TGATGCTACC GCGGAATCAG TAGATGGCTA TATAAGTCCA
TTTATAGGTA AAAAATGTGG CTCGAATGCA TCGATAATCT ACATTACTGA TGGCGCCCCA
ACTAGTGACA CTGATGCGCA GGGGAAAGTA AAATCACTAT TAGGACTTGC ATCAACAACC
ACAGATGCGG ATGTTCCTGG GAGTGAAAGT CTAGGAAACG ATAATTATAG TTTGTTACCC
CCCCTTGCTC ATTGGTTAGC AACAAATGAT GTTAATCCAA ACTCAGAAGG TGACCAAGTT
GTTAACACTT ATACAATCGG TTTTAGCGCC GATGCACCAG TTGATATATT GATATCGACA
GCAGCATTAG GTGGGGGTAA ATATTATTCA GCATTAGACC CCGCCGAATT ACAAGCATCT
TTAATTAGCG CTATTGCCGC TATCGAATTA GACAGTTCTA GCTTTTCTTC TCCTTCAGTC
GTGCTTGATA AAACCCAAAC GGGGAATTCT GCTTATTTTG CTATGTTTTT ACCAGGCAAA
GGGCCGCGCT GGTCTGGTAA CCTTAAAAAA TTCAAGATTA GCTCTTCAGG AGAGGTATTA
GACAAAAATA ATATCAAAGC ATTTTCTAGT GATGGACGTA TTGCTAAAGA TGCATGTTCA
TTATGGGCTA CCGATTCCGA TTGTGCCGCT GGAGACTATG AAGGGTATGA TGTTAATGAC
GGTGGTGTCG CTGCTGCGTT GCGATATAAC TACCAATATG CTTCTGGGCT CGCCACAAGA
AAGGTACTTA CAAATACTAG TGATTCTGGC CCGCTGGTTG CTTTAACAAA GAGCAATGCA
AAAATTAAAG GTAATTTAAC AGATGTACAA TTGGCAAATT TCTTAAATGT TGATCAAAAT
AGTATCGAAG ACACCTTAGC TTGGATAAAA GGTCAGAATG TTGATAATGA AAAATATGGT
TTAACAACAG TCCCCTATCT TAGACAGGAC ATATTAGGCG ATCCACTTCA TTCAAGACCT
CTGGTCATAA ATTATGGCAC AACGACTTCA CCTGATATAA GAATTATTAT GGGAACGAAC
CATGGCTTTG TTCATATGTT TAAAGATATT GAGTCAGAGG TTAATGGTGA AAGTGTCAGT
GCTGTATCTG AATCATGGGC TTTTATTCCT CATGAATTAT TACCTAATAT TAAAAGCTTA
AGGGATAACC CTCAAACTGG TGTGCATTCT GTCTATGGAA TGGATGGTTC ACCTGTCCCT
TATCTCGAAT ATGATGCTGA TGGTAAAGTC AATAAAGCAT GGATATTTAT GGGAATGAGA
AGAGGTGGAA CTTCTTATTA CGCTTTAGAT GTAACCAATA AAGATGCTGC ACCAACTCTA
TTATGGGTTA AAAACAACAG TAATTATCCA TTATTAGGAC AATCCTGGTC TGAACCTGTA
ATCACTAAAA TATCTGGATG GAAAGATTCA ACCGGGAAAG CAAAACCTGT ATTAGTTATT
GGTGCCGGAT ATAATCCAAA TACCAAAGAC GGAGCCAGTG TAGGTACTAA TGACACTACA
GGGGCAGGTA TATATATTTT AGATGCAGCA ACAGGATCTA AACTCCATAG CTTTAGTGCC
TCAGGCTCAG ATACCACTAT GCCTGGCATT GTTGATAGTA TTCCGAGCAA AGTGGCAGTA
TTAGATAGTA ACAATGATCA ATTAACCGAT CGCATTTACG CAACAGATAC TGGTGCTAAT
GTGTGGCGTT TAGATTTACC GGGGTTACCG ACAGACACCC AAAACCCATG GAGTGCGTAT
CATTTTGCGA GCATGGGAGG AGGGGATCTT ACATCTGATA TTCGTTTCTA TTCTGAGCCA
GTAATAGCTC AAACAGCTTT TAGTAATGTA GCTGAACATA CTTATACAGA TATAAACAAT
AATAGTGTCA CTTCAAAACA ATACCAAAGC ATCCCTTACG ATGCAGTTGT TGTAGGGAGT
GGACATAGAG CCAATCCTTT GAATAAAAGT AGAAATGATA AGTTTTTTGT ATTCCAAGAT
AGGAATATTA TTTCTAAATC TTATAGCTCT GCTGCTGGGA ATACTGTTCC AGATACATTA
ACTATTTCAG ATTTATATGA TGTAACTACG GAGTCCCCAA CCGAAGAAAC AGCATTAATC
ACATTTGGCC TAAAGCGAGG TTGGTATTAT CGTTTCGCAG ATGCTGGTGA AAAATCTTTA
TCCGCCGCAA CAATTGTGCA GGGAAAAGTA TTTTTTACAT CCTATGTGCC TCAGACCGGA
GCAACTGAAA ATGCATGTTT GGTTCCAGGT GAAGGACGTC TTCGCGGCCG AGATCTCCAT
AAAGGAGGGA AAGTTTACAG CAACTCACAA GACTATTTTA AAATGAGCGA ACAGGTTCCT
GATACTCCAA CCTTAGTAAT TCCTAAAAAT GGTGATGATA GTAGCTATAT GTATTTAATC
GGAATTGGCG ATGCCGCAAA TGATATGATC AAAAAAGATC TTTTGGGTGA TGATGGTTGT
GCTGCTGGCG ATAACAAATG TGTCGGTGGT GGCTTAGGCG TTAATCAGAT CTATTATCAT
ATGAAAGAGA ATTAA
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| Protein sequence | MFSKYPIFIM LFSVLGFVAN AVADDTELYV LESSVRSDDN PQVLIILDTS GSMGNTMSAS
PFLVQPNLTS GTKLYYSTSS STVPTANSTN FITYSKNGCH SSVEFLQKFG IYTGYFREYK
GSKWQEFPVS DGSNITKVDC YEDIAVGDTT NASGVGAGYP VDDLSDAYKN DGNALNNAKL
TDFGLGEPIT LFTQQYVQWY YNKPAATNTD RITVAKRVLN EVIVNTPGVD LGLMLFNYNA
SGSNRSSENK DGGRVVSKIN TGNINNKKAL ASIVKNTIAI KSNNTPLCET LYEAALYLHG
KPLEYGHDTY DSVAATPLNK TWKWVKKWNG WIEESTPVNP AQYNPGYDAT AESVDGYISP
FIGKKCGSNA SIIYITDGAP TSDTDAQGKV KSLLGLASTT TDADVPGSES LGNDNYSLLP
PLAHWLATND VNPNSEGDQV VNTYTIGFSA DAPVDILIST AALGGGKYYS ALDPAELQAS
LISAIAAIEL DSSSFSSPSV VLDKTQTGNS AYFAMFLPGK GPRWSGNLKK FKISSSGEVL
DKNNIKAFSS DGRIAKDACS LWATDSDCAA GDYEGYDVND GGVAAALRYN YQYASGLATR
KVLTNTSDSG PLVALTKSNA KIKGNLTDVQ LANFLNVDQN SIEDTLAWIK GQNVDNEKYG
LTTVPYLRQD ILGDPLHSRP LVINYGTTTS PDIRIIMGTN HGFVHMFKDI ESEVNGESVS
AVSESWAFIP HELLPNIKSL RDNPQTGVHS VYGMDGSPVP YLEYDADGKV NKAWIFMGMR
RGGTSYYALD VTNKDAAPTL LWVKNNSNYP LLGQSWSEPV ITKISGWKDS TGKAKPVLVI
GAGYNPNTKD GASVGTNDTT GAGIYILDAA TGSKLHSFSA SGSDTTMPGI VDSIPSKVAV
LDSNNDQLTD RIYATDTGAN VWRLDLPGLP TDTQNPWSAY HFASMGGGDL TSDIRFYSEP
VIAQTAFSNV AEHTYTDINN NSVTSKQYQS IPYDAVVVGS GHRANPLNKS RNDKFFVFQD
RNIISKSYSS AAGNTVPDTL TISDLYDVTT ESPTEETALI TFGLKRGWYY RFADAGEKSL
SAATIVQGKV FFTSYVPQTG ATENACLVPG EGRLRGRDLH KGGKVYSNSQ DYFKMSEQVP
DTPTLVIPKN GDDSSYMYLI GIGDAANDMI KKDLLGDDGC AAGDNKCVGG GLGVNQIYYH
MKEN
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