| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfri_2855 |
|---|
| Symbol | |
|---|
| ID | 4279760 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella frigidimarina NCIMB 400 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008345 |
|---|
| Strand | - |
|---|
| Start bp | 3439996 |
|---|
| End bp | 3440739 |
|---|
| Gene Length | 744 bp |
|---|
| Protein Length | 247 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 43% |
|---|
| IMG OID | 638135673 |
|---|
| Product | type II secretion system protein E |
|---|
| Protein accession | YP_751533 |
|---|
| Protein GI | 114564019 |
|---|
| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG5008] Tfp pilus assembly protein, ATPase PilU |
|---|
| TIGRFAM ID | [TIGR01420] pilus retraction protein PilT |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 2 |
|---|
| Plasmid unclonability p-value | 0.000000216889 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | TTGAAATCTA CTATTTTTAG GGGGGATTAC CCAGGTAAAT CGACTTCGTT GGCAGCGCTG
GTGGGATATC GAAATGCTCA TGCTCGCGGA CATATTCTGA CCATTGAAGA CCCTGTTGAG
TTTGTACATA ACCATCGTAA AAGTATAGTT ACTCAGCGTG AAGTGGGTAT TGATACCGAC
TCATTTGATG CCGCACTTAA AAGTTCACTG CGTCAAGCGC CAGATGTCAT TCTGATTGGT
GAAATTCGTA CTCAAGAAAC CATGGAATTT GCGTTGTCAT TTGCCGAAAC GGGTCATTTA
TGTATGGCAA CCTTACACGC AAACAATGCT AACCAGGCTC TCGATCGCAT TATGCATTTA
GTACCGGAAA GCAAACACAA CCAGTTGCTA TTTGATTTGT CGTTAAATTT ACGTGGCATT
GTAGCGCAAC AGCTTATTCC TAAATCTGAC GGAACTGGTC GTCGCGCTGC CATTGAAGTG
TTAATCAATA CTCCCCGAGT GGCCAGTTTG ATTGCTAAAA ATGAGTTGCA TTTACTTAAA
GAAACCATGG GTAAGTCACG CGAGCAAGGG ATGCAGACTT TTGACCAAGC ATTGCTAGAT
TTATATGTAG AGGGTGAGAT TAGTTACGCC GATGCATTAC ATCATGCCGA TTCGCCTAAT
GATTTACGTT TAATGATTAA ATTGCGAAAT AACGAAGCAG CTTCTTCAGG GTCAATGGAA
GGCATTACTC TCGACATGGA TTAG
|
|---|
| Protein sequence | MKSTIFRGDY PGKSTSLAAL VGYRNAHARG HILTIEDPVE FVHNHRKSIV TQREVGIDTD
SFDAALKSSL RQAPDVILIG EIRTQETMEF ALSFAETGHL CMATLHANNA NQALDRIMHL
VPESKHNQLL FDLSLNLRGI VAQQLIPKSD GTGRRAAIEV LINTPRVASL IAKNELHLLK
ETMGKSREQG MQTFDQALLD LYVEGEISYA DALHHADSPN DLRLMIKLRN NEAASSGSME
GITLDMD
|
|---|
| |