Gene Sfri_2773 details

Gene Information

• Locus tag: Sfri_2773
• ID: 4279679
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Shewanella frigidimarina NCIMB 400
• Kingdom: Bacteria
• Replicon accession: NC_008345
• Strand: +
• Start bp: 3334666
• End bp: 3336822
• Gene Length: 2157 bp
• Protein Length: 718 aa
• Translation table: 11
• GC content: 38%
• IMG OID: 638135592
• Product: TPR repeat-containing protein
• Protein accession: YP_751452
• Protein GI: 114563938

Plasmid Coverage information

• Num covering plasmid clones: 16
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGCTGCGTT GCTTTTCTTT GGTCATATTA TGTTCGATAC TATTAAGTTC AATGGTTTCG 
GCAAGGGATA TTGAGCAGCA AGAAATATTG TTCAAAGAAA ATCCACAAAA GCTTTATACA 
AAGCTAATGA GGGCCACCGA GTTCCCGTTA CAATTTTCAA ATAATGTGGA GTTTGAGCAA 
GCCGCTAATG AATTAAGTTA CCCTCCAAAT GAACTCCATC GTGATTTAGA GCTATTAGCT 
AGGCTCAATT TAGAAGCAAA ACTGACATCG CCAACTAAAT ATCAAGATGC CGAATTGCTC 
ATAACACAAT TAGACGCGAT AGCATCAACA ACACTTGAAC AAGCTGTCGT CATTATGCTT 
AAAGCGCGGA TTAAAGGGCG TCAAAACCAA GAATATAATC AGGTAATAGT TGAATATAAT 
GATGCGCTGA ATATGGTAAA CACAGATGTC AGTCTAGAAA GCACGCTGTT TAAATCAACG 
CTTCATGAAC AACTCAGCAT GTTACATTCA CTGCTCCTTC AACCTACTCC AGCATTTTCT 
CACTTAAATC GTTACCGCGA TATTGCTTAC CAATTACACA ATAATTATTT TATCTCCGAT 
GCCGAAACCC AGTTAGGTCG TTATTACAAT CTTAATGGCG ATCAAGCCAA GTCACTACAG 
CATTATAGTG AAGCATTTCG TTTAGCTAAT AGCCTAGACT ACCCAGGAAT TAAAGCACAT 
ACACAACTTA ATCTTGCGCG TACATACCGA GATTTAGAAC AATGGGATGA TGCACTAAAA 
TATGCTCATA ATGCGGCCGA AATACTTCAA GCGATAGGCC AAGATGTCTA CTTAGCCGAG 
ACCTTAACGG TTATCGCAAT GATTTACGCA GGCCAAGATC AATGGAATAA AAGCATTGAC 
TATTATTTAA ATGTCCAGCA AGTCAATGAG CGTATGGGAA ATGAAATAGC CATAGGACTC 
ACCTACAACA ACTTAGGCGA AGCTTACTTC AAATTAAATA ATATCCAAGC AGCATTGAAC 
GTAATGCAAC GTGCAAATGA TATATTTAGG GCTCGAAAAG TAGAACATTA CTTAGTACAC 
AACGAACTAC TATTTGCCCA AATAAATACT AGTGAAGGCA TGTGGAATGA GGCGATTGAT 
CATGCGAGTA AGGCTATTGA ACTGGCTAAA AAGAAACATT TAAATGATGT GCAAACAGAA 
GCATTAGGCT ATTTATCTAC CGCATATCGA AAAACTAACA ATCCCAACGC AGCACTTGCA 
ACAGTCGATG CCATTGTTGA ACTGATCAAT ACATCGCAAG AAAAATCCGA ACAAACAAAT 
GATTTCTCTG AACTCACTGA ACAAAAACTA AAATTCGAGC TGGGTTTATT GCAAAATAAA 
CTACAACAAC AAACTGCGAA AAATAAATAC AATCAATTTA TCATTTTAGT ATTAATTCTC 
GGTTTTAGTA TTGCGATTAT CGTGTTGATA TTTATCTACA GAAAATTTCA GCAACGAAAT 
ACTTTATACC TTAACGCCCA ACGTTTAAAT ACCATAGACC CAATAACACA AGCACAAGGT 
TACAGGGCGT TTATTCAACG GATAAGCACA CTAAAACACA CAGAATCTAA AACGCTTGCG 
TTAGTGAATA TTAATAAATT AAACAATATT GATATTCAGC TTGGCCTCAC TGAGTCTGTA 
GCATTAATGC AACATTTTAA TAGCCAGTTC TGTAAACATT TAGATACTGA AGTGTTTATC 
ATTCGTTCAG GATTAATTGC ATGTTATTTC GATAAGCAAT ATGACGCCGA AAATATCTTA 
CATGCTGTCA TTGAGTGTCT TAAACAATTA CAAGAGACCC AATTTACCAT TCCTAACTTT 
GCTAGCCTAT CCGCGGTTCA ACATGCCAGT ATTGGCCACA TTAATTTACC ATTACTGGGC 
AACCCAGATG CCAGCATCAG TGCAGAATTA CAATTTGAAA CATTGCAATT CGCACTAGCT 
GCAGCAATGG AGATAACAGA GCAACCCGCT TATGTTTCAT TGCGACCACT TAATTTTGCA 
CCAGCGGCTG TTTTTATGCG CCCACTATAT TTAAATCTGA CTCAAGCACT TAATCGCGGC 
ATCATTCGTG CGGAAAGTAA TCGTAACACC CAAGATATCA ACTGGCCGAA AAACTAA 

 

Protein sequence

MLRCFSLVIL CSILLSSMVS ARDIEQQEIL FKENPQKLYT KLMRATEFPL QFSNNVEFEQ 
AANELSYPPN ELHRDLELLA RLNLEAKLTS PTKYQDAELL ITQLDAIAST TLEQAVVIML 
KARIKGRQNQ EYNQVIVEYN DALNMVNTDV SLESTLFKST LHEQLSMLHS LLLQPTPAFS 
HLNRYRDIAY QLHNNYFISD AETQLGRYYN LNGDQAKSLQ HYSEAFRLAN SLDYPGIKAH 
TQLNLARTYR DLEQWDDALK YAHNAAEILQ AIGQDVYLAE TLTVIAMIYA GQDQWNKSID 
YYLNVQQVNE RMGNEIAIGL TYNNLGEAYF KLNNIQAALN VMQRANDIFR ARKVEHYLVH 
NELLFAQINT SEGMWNEAID HASKAIELAK KKHLNDVQTE ALGYLSTAYR KTNNPNAALA 
TVDAIVELIN TSQEKSEQTN DFSELTEQKL KFELGLLQNK LQQQTAKNKY NQFIILVLIL 
GFSIAIIVLI FIYRKFQQRN TLYLNAQRLN TIDPITQAQG YRAFIQRIST LKHTESKTLA 
LVNINKLNNI DIQLGLTESV ALMQHFNSQF CKHLDTEVFI IRSGLIACYF DKQYDAENIL 
HAVIECLKQL QETQFTIPNF ASLSAVQHAS IGHINLPLLG NPDASISAEL QFETLQFALA 
AAMEITEQPA YVSLRPLNFA PAAVFMRPLY LNLTQALNRG IIRAESNRNT QDINWPKN