| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfri_2717 |
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| Symbol | |
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| ID | 4279623 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella frigidimarina NCIMB 400 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008345 |
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| Strand | + |
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| Start bp | 3267304 |
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| End bp | 3268701 |
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| Gene Length | 1398 bp |
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| Protein Length | 465 aa |
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| Translation table | 11 |
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| GC content | 41% |
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| IMG OID | 638135536 |
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| Product | TRAP dicarboxylate transporter, DctM subunit |
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| Protein accession | YP_751396 |
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| Protein GI | 114563882 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG1593] TRAP-type C4-dicarboxylate transport system, large permease component |
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| TIGRFAM ID | [TIGR00786] TRAP transporter, DctM subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 0.0391497 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACTATAG CAACTCTATT TATAGCTTTA TTTATTTGCA TGATGATTGG TATGCCTATT
GCTATCGCAT TAGGTTTTTC AAGCATGCTA ACTATTTTGT TATATTCAAA TGATTCGCTC
GCTTCAATAG TTTTAAAACT GTATGAGTCG ACTTCAGAAC ACTACACTTT ATTGGCAATT
CCATTCTTTA TTCTATCATC GGCATTTTTG TCTACTGGTG GCGTAGCAAG ACGTATTATT
GACTTTGCAA TGGACAGCGT AGGTCATATA CGCGGTGGTC TTGCTATGGC ATCGGTGATG
GCTTGTATGC TGTTTGCCGC GGTATCTGGT TCATCACCTG CAACAGTGGC TGCTATTGGC
TCTATTGTTA TTGTTGGTAT GGTACGCGCA GGTTATCCAG AAAAATTTGC AGCAGGCGTT
ATCACTACTT CAGGTACCTT AGGCATTTTA ATTCCACCAT CGATTGTAAT GCTGGTTTAT
GCGGCTGCGA CAGAAGTGTC TGCCGCTAGA ATGTTTATGG CTGGTTTAAT TCCAGGCTTA
ATGATGGGTT GTATTTTAAT GTTAGCAATC TACATTGTTG CACGAATTAA AAAACTGCCT
TCGCGCCCTT TCCCTGGAAT AAAAGCACTA AGCATATCAA GTGCTAAAGC AATGGGTGGA
TTAGCACTCA TTCTTATTGT ACTGGGTTCA ATCTACGGTG GTGTTGCCAG TCCAACTGAA
GCAGCTGCGG TAGCTTGTGT GTATGCTTAC TTTATTGCAG TATTTGGCTA TCGGGATATT
GGACCACTCA AGAATGTTGC TTGGCGAAAT AAACAAGAGT CTTTAATCGG CGCCTCATTA
CGCAATATAG GACACATGTT GCTTGCCGTT ATTAAAACGC CAACCGACAA AGAAATCCGT
CATGTAGTAC GTGATGGCGC TAAAGTTAGC ATTATGTTGT TGTTCATTAT TGCTAATGCC
ATGCTGTTTG CTCACGTATT AACCACCGAG CGTATTCCAC ATATTATTGC CGAAACGATT
GTCGGATTTG GATTACCCGC ATGGGGTTTT TTGATCATCG TCAACTTATT GTTATTAGCT
GCGGGTAACT TTATGGAACC TTCAGCTATT CTGTTGATTA TGGCGCCAAT ATTATTCCCT
ATCGCAACCC AGTTAGGTAT CGATCCTATT CACTTAGGCA TCATTATGGT GGTCAATATG
GAGATAGGCA TGCTCACACC GCCTGTAGGG CTCAATCTGT TTGTCACTGC AGGAATAACA
GGAAAAAGTA TGGGGTGGGT AATTCAATCG TGCCTGCCTT GGCTGGTATT GTTACTCGGT
TTCTTGATGT TGATTACCTA TATTCCTCAA ATTTCACTAT TTTTACCTGA GTATATAGAC
AAATTAAACG GCTATTAG
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| Protein sequence | MTIATLFIAL FICMMIGMPI AIALGFSSML TILLYSNDSL ASIVLKLYES TSEHYTLLAI
PFFILSSAFL STGGVARRII DFAMDSVGHI RGGLAMASVM ACMLFAAVSG SSPATVAAIG
SIVIVGMVRA GYPEKFAAGV ITTSGTLGIL IPPSIVMLVY AAATEVSAAR MFMAGLIPGL
MMGCILMLAI YIVARIKKLP SRPFPGIKAL SISSAKAMGG LALILIVLGS IYGGVASPTE
AAAVACVYAY FIAVFGYRDI GPLKNVAWRN KQESLIGASL RNIGHMLLAV IKTPTDKEIR
HVVRDGAKVS IMLLFIIANA MLFAHVLTTE RIPHIIAETI VGFGLPAWGF LIIVNLLLLA
AGNFMEPSAI LLIMAPILFP IATQLGIDPI HLGIIMVVNM EIGMLTPPVG LNLFVTAGIT
GKSMGWVIQS CLPWLVLLLG FLMLITYIPQ ISLFLPEYID KLNGY
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