Gene Sfri_2700 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSfri_2700 
SymbolsecD 
ID4279606 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella frigidimarina NCIMB 400 
KingdomBacteria 
Replicon accessionNC_008345 
Strand
Start bp3244182 
End bp3246032 
Gene Length1851 bp 
Protein Length616 aa 
Translation table11 
GC content44% 
IMG OID638135505 
Productpreprotein translocase subunit SecD 
Protein accessionYP_751379 
Protein GI114563865 
COG category[U] Intracellular trafficking, secretion, and vesicular transport 
COG ID[COG0342] Preprotein translocase subunit SecD 
TIGRFAM ID[TIGR00916] protein-export membrane protein, SecD/SecF family
[TIGR01129] protein-export membrane protein SecD 


Plasmid Coverage information

Num covering plasmid clones11 
Plasmid unclonability p-value0.165679 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
GTGTTAAATA AATACCCAAT GTGGAAAAAC ATCATGGTGA TGCTTGTCAT TGCCATTGGT 
AGTTTTTATG CAATTCCAAA TTTGTTTGGT GAAGATCATG CAGTGCAGAT TGTCGCGACT
CGCGGCGCAG AAGTTACTGC ATCGACACAA ACGACTGTGG TTGATTTATT AGATAGTCAG
GGTATTGCGG TAAAGCGTGC CGAGCTAGAA AATGGTCAGT TATTAGTCCG AGTGCAAAAT
CCTGAGCAAC AGTTAGTCGC TAAAGAAGCT ATCGCTGAAC TGCTTGGCCA GAAATATACC
GTTGCGCTAA ACTTAGCTCC GGCAACCCCT GAATGGCTTG AAGCTGTTGG TGGGTCACCG
ATGAAATTAG GTTTAGATTT ACGTGGTGGT GTTCACTTCC TAATGGAAGT GGATATGGGC
GAAGCTATTC GTAAAATGGA AGAAGCTAAG ATAGCTGATT TCCGTAGCCA GCTTCGTGAA
GAGAAAATTC GTTATGCTGG TATTCGTAAA ACCCCTAAAG GGATTGCGAT TAAGTTTCGA
GATGCTGAAA CGGTTGACCA AGCAGAGACT TATTTAAAAA CCCGCAGCAA TGACATGACC
TATACCGATG CGAGTAGCGG TAATGAGTTT ATGCTTCTTG CCACCATGAG TGATGCTTAC
CTTAAGCAAA TTAAGGAAGA AGCACTGCAG CAAAACATTA CCACTATTCG TAACCGTGTT
AACGAGCTGG GTGTTGCTGA GCCAGTAGTA CAACGTCAAG GCGCCGAGCG CATTATTGTT
GAACTGCCAG GTGTACAAGA CACTGCTCGA GCAAAAGAAA TTTTAGGTGC TACGGCATCA
ATTGAATTTC GTATGGTTGA TGATAAGGCT GACGTAAGCG CAGCTGCAAA TGGTCGTGTT
CCTGCAGGCG CAGAAGTGTA CCAACGCCGT GAAGGCGGGA TTGCAGTATT GAAAAAAGAA
GTGATGCTAA CGGGTGATCA TATCACTGGT GCACAACCTA CTTTTGATGA ATACAGTCGT
CCACAGGTAG CGATTAATCT TGACGCAAAA GGCGGCTCGA TTTTCTCTAA CGTGACCAAA
GACAATATCG GTAAACCAAT GGCAACATTA TTTATCGAAT ATAAAGACAG TGGTACACGT
AATCCTGATG GCACAGTGAA AATGACTCGT ATTGAAGAGG TTATTTCAGT TGCGACGATT
CAGGCTCGTT TAGGCCGTAA TTTTGTGATT ACCGGTCTTG AGCACACTGA AGCACAAAGC
CTAGCGTTAT TATTACGTGC AGGTGCGTTG ATTGCGCCAG TGACCATTGT GGAAGAAAGA
ACTATTGGCC CAAGCCTAGG TGCTGAAAAC ATCCAAAACG GTGTTCAAGC GATGATTTGG
GGCATGGTTG TTGTTCTTGT ATTTATGATG GTTTATTACC GTGCATTTGG TTTTATTGCC
AACCTTGCAT TGCTGGCAAA CCTAATTATG GTTGTTGGTG TGATGTCTAT GATCCCAGGT
GCGGTATTAA CCTTACCAGG TATTGCGGGC ATGGTATTAA CGGTGGGCAT GGCGGTTGAC
GGTAACGTAC TTATTTTTGA ACGTATCCGT GAAGAACTTC TTGGCGGCCG CAGCGTGCAA
CAAGCTATCC ATGAAGGTTA TGGTAATGCT TTTTCAACCA TTGCAGATGC TAACATCACT
ACCTTTATGA CAGCGTTAAT CTTGTTTGCT GTCGGTACCG GTGCGGTGAA AGGCTTTGCT
GTTACCTTAA TGATAGGTAT CGCGACTTCG ATGTTTACAG CCATTGTTGG CACACGCTCA
ATCGTGAATG CGGTTTGGGG TGGTAAGCGC GTTAAGTCAT TGTCTATCTA A
 
Protein sequence
MLNKYPMWKN IMVMLVIAIG SFYAIPNLFG EDHAVQIVAT RGAEVTASTQ TTVVDLLDSQ 
GIAVKRAELE NGQLLVRVQN PEQQLVAKEA IAELLGQKYT VALNLAPATP EWLEAVGGSP
MKLGLDLRGG VHFLMEVDMG EAIRKMEEAK IADFRSQLRE EKIRYAGIRK TPKGIAIKFR
DAETVDQAET YLKTRSNDMT YTDASSGNEF MLLATMSDAY LKQIKEEALQ QNITTIRNRV
NELGVAEPVV QRQGAERIIV ELPGVQDTAR AKEILGATAS IEFRMVDDKA DVSAAANGRV
PAGAEVYQRR EGGIAVLKKE VMLTGDHITG AQPTFDEYSR PQVAINLDAK GGSIFSNVTK
DNIGKPMATL FIEYKDSGTR NPDGTVKMTR IEEVISVATI QARLGRNFVI TGLEHTEAQS
LALLLRAGAL IAPVTIVEER TIGPSLGAEN IQNGVQAMIW GMVVVLVFMM VYYRAFGFIA
NLALLANLIM VVGVMSMIPG AVLTLPGIAG MVLTVGMAVD GNVLIFERIR EELLGGRSVQ
QAIHEGYGNA FSTIADANIT TFMTALILFA VGTGAVKGFA VTLMIGIATS MFTAIVGTRS
IVNAVWGGKR VKSLSI