Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sfri_2700 |
Symbol | secD |
ID | 4279606 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella frigidimarina NCIMB 400 |
Kingdom | Bacteria |
Replicon accession | NC_008345 |
Strand | - |
Start bp | 3244182 |
End bp | 3246032 |
Gene Length | 1851 bp |
Protein Length | 616 aa |
Translation table | 11 |
GC content | 44% |
IMG OID | 638135505 |
Product | preprotein translocase subunit SecD |
Protein accession | YP_751379 |
Protein GI | 114563865 |
COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG0342] Preprotein translocase subunit SecD |
TIGRFAM ID | [TIGR00916] protein-export membrane protein, SecD/SecF family [TIGR01129] protein-export membrane protein SecD |
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Plasmid Coverage information |
Num covering plasmid clones | 11 |
Plasmid unclonability p-value | 0.165679 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | GTGTTAAATA AATACCCAAT GTGGAAAAAC ATCATGGTGA TGCTTGTCAT TGCCATTGGT AGTTTTTATG CAATTCCAAA TTTGTTTGGT GAAGATCATG CAGTGCAGAT TGTCGCGACT CGCGGCGCAG AAGTTACTGC ATCGACACAA ACGACTGTGG TTGATTTATT AGATAGTCAG GGTATTGCGG TAAAGCGTGC CGAGCTAGAA AATGGTCAGT TATTAGTCCG AGTGCAAAAT CCTGAGCAAC AGTTAGTCGC TAAAGAAGCT ATCGCTGAAC TGCTTGGCCA GAAATATACC GTTGCGCTAA ACTTAGCTCC GGCAACCCCT GAATGGCTTG AAGCTGTTGG TGGGTCACCG ATGAAATTAG GTTTAGATTT ACGTGGTGGT GTTCACTTCC TAATGGAAGT GGATATGGGC GAAGCTATTC GTAAAATGGA AGAAGCTAAG ATAGCTGATT TCCGTAGCCA GCTTCGTGAA GAGAAAATTC GTTATGCTGG TATTCGTAAA ACCCCTAAAG GGATTGCGAT TAAGTTTCGA GATGCTGAAA CGGTTGACCA AGCAGAGACT TATTTAAAAA CCCGCAGCAA TGACATGACC TATACCGATG CGAGTAGCGG TAATGAGTTT ATGCTTCTTG CCACCATGAG TGATGCTTAC CTTAAGCAAA TTAAGGAAGA AGCACTGCAG CAAAACATTA CCACTATTCG TAACCGTGTT AACGAGCTGG GTGTTGCTGA GCCAGTAGTA CAACGTCAAG GCGCCGAGCG CATTATTGTT GAACTGCCAG GTGTACAAGA CACTGCTCGA GCAAAAGAAA TTTTAGGTGC TACGGCATCA ATTGAATTTC GTATGGTTGA TGATAAGGCT GACGTAAGCG CAGCTGCAAA TGGTCGTGTT CCTGCAGGCG CAGAAGTGTA CCAACGCCGT GAAGGCGGGA TTGCAGTATT GAAAAAAGAA GTGATGCTAA CGGGTGATCA TATCACTGGT GCACAACCTA CTTTTGATGA ATACAGTCGT CCACAGGTAG CGATTAATCT TGACGCAAAA GGCGGCTCGA TTTTCTCTAA CGTGACCAAA GACAATATCG GTAAACCAAT GGCAACATTA TTTATCGAAT ATAAAGACAG TGGTACACGT AATCCTGATG GCACAGTGAA AATGACTCGT ATTGAAGAGG TTATTTCAGT TGCGACGATT CAGGCTCGTT TAGGCCGTAA TTTTGTGATT ACCGGTCTTG AGCACACTGA AGCACAAAGC CTAGCGTTAT TATTACGTGC AGGTGCGTTG ATTGCGCCAG TGACCATTGT GGAAGAAAGA ACTATTGGCC CAAGCCTAGG TGCTGAAAAC ATCCAAAACG GTGTTCAAGC GATGATTTGG GGCATGGTTG TTGTTCTTGT ATTTATGATG GTTTATTACC GTGCATTTGG TTTTATTGCC AACCTTGCAT TGCTGGCAAA CCTAATTATG GTTGTTGGTG TGATGTCTAT GATCCCAGGT GCGGTATTAA CCTTACCAGG TATTGCGGGC ATGGTATTAA CGGTGGGCAT GGCGGTTGAC GGTAACGTAC TTATTTTTGA ACGTATCCGT GAAGAACTTC TTGGCGGCCG CAGCGTGCAA CAAGCTATCC ATGAAGGTTA TGGTAATGCT TTTTCAACCA TTGCAGATGC TAACATCACT ACCTTTATGA CAGCGTTAAT CTTGTTTGCT GTCGGTACCG GTGCGGTGAA AGGCTTTGCT GTTACCTTAA TGATAGGTAT CGCGACTTCG ATGTTTACAG CCATTGTTGG CACACGCTCA ATCGTGAATG CGGTTTGGGG TGGTAAGCGC GTTAAGTCAT TGTCTATCTA A
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Protein sequence | MLNKYPMWKN IMVMLVIAIG SFYAIPNLFG EDHAVQIVAT RGAEVTASTQ TTVVDLLDSQ GIAVKRAELE NGQLLVRVQN PEQQLVAKEA IAELLGQKYT VALNLAPATP EWLEAVGGSP MKLGLDLRGG VHFLMEVDMG EAIRKMEEAK IADFRSQLRE EKIRYAGIRK TPKGIAIKFR DAETVDQAET YLKTRSNDMT YTDASSGNEF MLLATMSDAY LKQIKEEALQ QNITTIRNRV NELGVAEPVV QRQGAERIIV ELPGVQDTAR AKEILGATAS IEFRMVDDKA DVSAAANGRV PAGAEVYQRR EGGIAVLKKE VMLTGDHITG AQPTFDEYSR PQVAINLDAK GGSIFSNVTK DNIGKPMATL FIEYKDSGTR NPDGTVKMTR IEEVISVATI QARLGRNFVI TGLEHTEAQS LALLLRAGAL IAPVTIVEER TIGPSLGAEN IQNGVQAMIW GMVVVLVFMM VYYRAFGFIA NLALLANLIM VVGVMSMIPG AVLTLPGIAG MVLTVGMAVD GNVLIFERIR EELLGGRSVQ QAIHEGYGNA FSTIADANIT TFMTALILFA VGTGAVKGFA VTLMIGIATS MFTAIVGTRS IVNAVWGGKR VKSLSI
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