| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfri_2640 |
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| Symbol | |
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| ID | 4279547 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella frigidimarina NCIMB 400 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008345 |
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| Strand | + |
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| Start bp | 3163305 |
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| End bp | 3164546 |
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| Gene Length | 1242 bp |
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| Protein Length | 413 aa |
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| Translation table | 11 |
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| GC content | 40% |
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| IMG OID | 638135436 |
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| Product | transcriptional regulator, CdaR |
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| Protein accession | YP_751319 |
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| Protein GI | 114563806 |
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| COG category | [K] Transcription
[T] Signal transduction mechanisms |
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| COG ID | [COG3835] Sugar diacid utilization regulator |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 0.513243 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCATTTAA GCATTAACCT CCTCCCAATA CTTAGCCAAC ATCAGGTATC ATTCAATACC
GATATTTATT GCCTAGAGAA ATTCATGTTT CAAATTGATA CGCTAATTGC TGCTAAAATT
GTCGACCGAA CCATGAAAAT TATTGGGCAT AATATCAATG TCATGAATGC TCAGGCGGTG
ATATTAGGTT CAGGCGATAT CGATCGAATT GGCACTGTAC ATGAAGGCGC ACTATTAGCT
ATCAGCCAAA ATCGCAATGT TGAAATAAGC CAAGCCATCG CTTCAAACTT ACATGGCGTC
AAACCTGGGC TAAATTTACC ATTACATTAC CATGGCCAAG TGGTTGGCGT TATCGGTATC
ACTGGCGAGC CAGACACATT AAGCCACTAT GGTGAACTGC TTAAGATGAC AGCAGAGATG
ATTGTCGAGC AAGCAAACTT GCAAGAGCAA TTACAGTGGC AAAATCGTCA AACAGAGGAG
TTTATTTCGC AACTCATTCA TGCCAATGAA CAAGACTTAC CTTCTTTACA ACAATGGGCA
TTGCAATTGG GTATCGATTT AAGCGTGCCG AGAGTGGCTG CCATCATTGA ACTCGATAGT
AATAACCCAC TATATCAACA AGACAATCAA GCATTAAAAC AAGTACTGTA TTTATTACAA
AATCCTGTAC GCGATAACTT AATTGCGATG ACATCACTCA CTCAATTAGT GATTTTAAAA
CCGGCTTTTT TAGATGGTAA GCAATTTGAC CCAGAGCTTG AAAATCAACG CATCAACAAA
TTGCTCAAAC GCTTACCCGC CAATATGCAG CTTAGCCTGC ATATTTCATT AGGGCATTAT
TTCGGTGGTG AACTCGGTAT TAGTTACTCT TATCGTACCG CTAAAGAAAC GTTAGATATT
GGCAAAAAAT TACATCCAAC AAAAACCAAA TATTTATACC AAGACTACAG CTTACAAGTG
CTGTTATCAG GACTGCGGCA CCACTGGCGA GGTAATGCGC TTGCCGGGCC GTACCTAAAA
CTCATTGAAG TCGACAATAA CCAGCAATTA CAAAAAACAC TTGCCGCTTA TCTAGATCAC
ATGGGAGATA TCCAAGCCTG CGCTAACAGT TTGTTTATCC ATCGAAACAC ACTGCGTTAT
CGACTAGATA AAATTCAAAC GATTACCAAC ATTGACCTAC GCAGTTTTAA TGGATTACTG
AGTTTATATT TAGGCCAGTT AATTCACCAA CCCAGCACCT AG
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| Protein sequence | MHLSINLLPI LSQHQVSFNT DIYCLEKFMF QIDTLIAAKI VDRTMKIIGH NINVMNAQAV
ILGSGDIDRI GTVHEGALLA ISQNRNVEIS QAIASNLHGV KPGLNLPLHY HGQVVGVIGI
TGEPDTLSHY GELLKMTAEM IVEQANLQEQ LQWQNRQTEE FISQLIHANE QDLPSLQQWA
LQLGIDLSVP RVAAIIELDS NNPLYQQDNQ ALKQVLYLLQ NPVRDNLIAM TSLTQLVILK
PAFLDGKQFD PELENQRINK LLKRLPANMQ LSLHISLGHY FGGELGISYS YRTAKETLDI
GKKLHPTKTK YLYQDYSLQV LLSGLRHHWR GNALAGPYLK LIEVDNNQQL QKTLAAYLDH
MGDIQACANS LFIHRNTLRY RLDKIQTITN IDLRSFNGLL SLYLGQLIHQ PST
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