Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sfri_2628 |
Symbol | |
ID | 4279535 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella frigidimarina NCIMB 400 |
Kingdom | Bacteria |
Replicon accession | NC_008345 |
Strand | - |
Start bp | 3143255 |
End bp | 3145861 |
Gene Length | 2607 bp |
Protein Length | 868 aa |
Translation table | 11 |
GC content | 41% |
IMG OID | 638135424 |
Product | TonB-dependent receptor |
Protein accession | YP_751307 |
Protein GI | 114563794 |
COG category | [P] Inorganic ion transport and metabolism |
COG ID | [COG4771] Outer membrane receptor for ferrienterochelin and colicins |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 0 |
Plasmid unclonability p-value | 0.00000198241 |
Plasmid hitchhiking | No |
Plasmid clonability | unclonable |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGCATAAGA ACGTATTAGC TAAGTCGGTG CGCTTAGCAC TGATCAGTGG TGCAGCAGCA GCCGCATTTG CTTCGCCAGC AGTTTTTGCT GCTGATGAAG ATGGCGCAAA AGTAGAGCGT ATTGAGGTTA CCGGTTCGCG TATTAAGCGT TCTGACCTTG AAGGTGCTTC ACCAATAACG ACCATTACAA CTGAAGATAT GAAGATGGAA GGTAACTTTA CAGTTGCTGA CGCACTTCGT AACAGTAACT TGAACTCTTT CGGTTCATTC TCTGAGCGTT CAGGTAGTTC TGCACAATCT CAAGCAACTA TTAACCTACG TGGTGCAGGC TCAAGCCGTA CTCTAGTACT TATTGACGGT AAGCGTTTCC CAGGTTCACC AACGCTAGGT GGTGCATCTG CTAACTTGAA CGCTATTCCA ATGGCTGCAG TTGAACGTAT CGAAATTCTA ACTGATGGTG CATCTTCAAC TTATGGTTCT GACGCGATTG CTGGTGTTGT TAACATCATC ATGAAAAAGA ACTATCAAGG TATTGAGTTC AATGTCGGTG GTGGTTCACG TGACCGTGAC GGCGGCTTAA CGAGTAAAGA ATTCTCGGTT GTTGCTGGCT ATCAAATGGA TAAAGGTAAC ATTACTTTTG CATTTGATCA TCAAGACCGA AAAGGCATTT CTGATGCAGA CCGTGACTTT ACTGCACCAT GGATGGAAGA CTTAAATGGT GATGGCGTTA TTCAAGCATA TTCTGAGACT GATGGCTGGA GTTATTATGG CGCAAGCGTA AAAGGTCCTG ATGGCATTTA TCAGCCATCT CCGCTTTGTG GTGATTTAGC TGCTGAATAT GGTGACAATG TATTTAAACA AGTACGTGGT GATGATCAAT TTGGTGCTGG TTCAGATTTG TGTATGTATG CATATGGTAA TGTGTCATAT AACAAAGCCT CTACAGATCG CAATACGGTA TATGTTGATG CTAACTATGA AATCGCTGAA GACTTAGAAT GGTTTGGCCG AGTAATGGTT ACACAAAGCA ATTCATTTGG TCGTTATGCA CCTCCTGCAG CGAATTGGAA TAACATGGCA GCAGATAACC CACATAACCC ATTTGATGTA GAAGCAAAAG GTTATTTCCG TTGGGTTGGT ATCGGTACTC GTGATGGGAA CGTAGATGAT TACAACCAAG ATTACCTAAC TGGTTTACGT GGTACAATCA GTGCGCTTAA TGATGCAGAG TGGGAAGTTT ACTACCACCA CAACATTGCC GATAACAAAT CTATCGGTGA GTATTACTTA AGTTATTCAG GTCTTGCTTA TAACGAAGCA AATGGTATTG ATTTGGGTTC TGAAGCTGGC ATCAATAACA TGAAAGCCAC CACTTTAACT CAAGGTAGTG CGATATTTGA TCAATATAAC GCTGGTATTG GTTTTGATGC GTTTGAATTA CCAGGTGGTT CTGTAGCACA TTATGTAGGT TTAGAATATT TTGACCAACA GTATAGTGAA GTGTATGACG CACAGTCAGA AGCTGGTTTA ATCGGTGGTA GTGCTGGTAA CTCTGCAGCA GGCGACCGTC AAGTGTGGGC AATGTTTTAC GAAGCGGTAT TACCGATAAC AGATGACATT GAATTAAACT TAGCGGCTCG TTACGATGAT TACAGTGACT TTGGTGATAA TATCGCACCT AAAGCAGCTA TACGCTGGCA AGCACTTGAA AATGTTGTTG TACGTGCATC ATATTCAGAA GCTTTCCGTG CTCCAGCATT GGATCAACTA TTTGCAGCAA CTACATTCAG TGCTGAAGAT GGTATTGATA AACCATATTG TGAAGCAACT GGTACACCTT GTTCTGAAAG ACAGTTTGAT ACATATATTA GTGCAAACAA AGAACTTGGC CCAGAAACGT CTCAATATGT TAACTTCGGT GTAGCATGGG ATATCGTTGA TGATATCGGC TTAAAAGTTG ATTATTTTAA CCTTAATATT GACGATGTAA TTGCTCAACG CTCAATTACA AGTGTTATGA CTGGTATTTA TGAAGGTACG TTGGCTCCTA GTAATACATT CTATGTAAAA CGTGATCCAG CAAGTGCAGG TCAAGCAATT GGTGCTGCAT CTGAAGTCGG TACTGGTTAT AGCAATGCTA ATACCTTAGA AATTTCAGGT ATCGATGTTG CGTTAAACGC AAAATTTGAA ACCAATATCG GTGACATAGG CTTTAACTGG ACAAATAGTT TTGTTCTTGA TTATACCGAA GAAGTTGATG GTGGTGCTGA GTCACGTGAT ACTTCTGGTT GGAATGGTCA GCCAGATTAC AAGTCTGTAT TCACAACAAA TTACCGCATG GGTGATCATA GTCTATCTTG GAACATGAAT TACACTTCAT CTACATTCTA TTTTGAAGAT GATGCTTCTA AAGGTGAGTT AGATTCATGG TTAATTCATA ACATTAGTTA TGTTTATGAT GCTGGTAATT ATGGTTCAAT TTTATTAGGT ATCAACAACC TAACTGATGA AGATCCTGTT CTTTCTCCTG ATGGAAAGTT TGAGAACGCT GATCTATATA ACAACTACGG TCGTGAGTAT CGTGCAAGTT ATACTCTTAA GTTCTAA
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Protein sequence | MHKNVLAKSV RLALISGAAA AAFASPAVFA ADEDGAKVER IEVTGSRIKR SDLEGASPIT TITTEDMKME GNFTVADALR NSNLNSFGSF SERSGSSAQS QATINLRGAG SSRTLVLIDG KRFPGSPTLG GASANLNAIP MAAVERIEIL TDGASSTYGS DAIAGVVNII MKKNYQGIEF NVGGGSRDRD GGLTSKEFSV VAGYQMDKGN ITFAFDHQDR KGISDADRDF TAPWMEDLNG DGVIQAYSET DGWSYYGASV KGPDGIYQPS PLCGDLAAEY GDNVFKQVRG DDQFGAGSDL CMYAYGNVSY NKASTDRNTV YVDANYEIAE DLEWFGRVMV TQSNSFGRYA PPAANWNNMA ADNPHNPFDV EAKGYFRWVG IGTRDGNVDD YNQDYLTGLR GTISALNDAE WEVYYHHNIA DNKSIGEYYL SYSGLAYNEA NGIDLGSEAG INNMKATTLT QGSAIFDQYN AGIGFDAFEL PGGSVAHYVG LEYFDQQYSE VYDAQSEAGL IGGSAGNSAA GDRQVWAMFY EAVLPITDDI ELNLAARYDD YSDFGDNIAP KAAIRWQALE NVVVRASYSE AFRAPALDQL FAATTFSAED GIDKPYCEAT GTPCSERQFD TYISANKELG PETSQYVNFG VAWDIVDDIG LKVDYFNLNI DDVIAQRSIT SVMTGIYEGT LAPSNTFYVK RDPASAGQAI GAASEVGTGY SNANTLEISG IDVALNAKFE TNIGDIGFNW TNSFVLDYTE EVDGGAESRD TSGWNGQPDY KSVFTTNYRM GDHSLSWNMN YTSSTFYFED DASKGELDSW LIHNISYVYD AGNYGSILLG INNLTDEDPV LSPDGKFENA DLYNNYGREY RASYTLKF
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