| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfri_2589 |
|---|
| Symbol | |
|---|
| ID | 4279496 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella frigidimarina NCIMB 400 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008345 |
|---|
| Strand | + |
|---|
| Start bp | 3095604 |
|---|
| End bp | 3096836 |
|---|
| Gene Length | 1233 bp |
|---|
| Protein Length | 410 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 40% |
|---|
| IMG OID | 638135382 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_751268 |
|---|
| Protein GI | 114563755 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG5505] Predicted integral membrane protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 26 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | TTGATAAATC AGGATCCTGT TATTTTAGGA TTATTAGCAC TTACCTTAGG GCTAATTTTC
TATAGTAGCG AACTACCAGG CAGACCATGG AAAACCTTAT ACCGCTTTGT ACCTGTAATG
GTGATGTGCT ACGTAGTGCC CTCTTTATTT AACACTTTTC ATATTGTGGA TATGGCAAAT
AGCCAACTCA GTTTTATTGC CTCTCGTTAT ATTATGCCAG CCTGTTTAAC ATTGCTGATT
ATCAGTGTTG ATATTAAATC GATGTTATTG CTCGGTCCAA AAATAATCAT ATTATTCTTC
ATCGGTACTT TGGGGATTAT TTTAGGTGCG CCACTGACGT TATATCTCTT TTCAATCATT
TCCCCCGAGC AGCTTAGCTG GGATGGTAAT GGCTCAACTT GGCGTGCCAT GGTTACGTTA
GCTGGCAATT GGGTTGGTGG TACTGCAAAT CAATTTGCCA TGAAAGAAAT CTACGATGTT
GAAGATAATA TGTTTGCCAT TATGATATCC GTTAATGTGG TGTTCTCAGC GCTTTGGATG
GCATTTTTAC TCATGTGTGC TCCCCATGCC GACAAAATAG ATATCAAAAT TGGAGCGGAT
GTAAAAGGTA TCCGTTTGTT AGTCGATGGG ATCCATTTAC GTAATACAAA ACCAGCATTA
CTACCGAATC TTAAAGGTTA TGTATTTATT TTTGCTGTTG CTTTTGGTGT GACAGGCTTA
GCCCATTGGG GGGCTGACGA GCTAGTCCCC TTTTTCGGCC AGCATTATCC AGAGTCTGGA
AAATGGAGTT TTACCTCGCA CTTTTTTTGG ATAGTAATAA TAGTAACCAG CACCAGCATT
GGGTTGTCAT ACACAAAAAT AAAACATTTG GAACAACTGG GTGCCTCTAA AATTTCTACG
GTATTATTGT ATTTCCTTAT TGCCACCATG GGATTAAAAA TGGACTTAAC CATGATTAAT
GACTTTCCCA TTTACTTTGC AATTGGGTTT GTTTGGTTAA TGATACATGC ACTATTGGTG
ATTATTGCAG GTGTACTCAT GAAAGCTCCA GTGGCGTACA TGGCCATAAG CAGCCAATGC
TGTATTGGCG GAGCAGCATC ATCTCCAGTT GTGGCTATGG CTTTTAATCG TCACTTAGCC
CCCGTTGCGG TTATTTTTTC TGTTTTTGGG TATGCTTGGG CAAATTACAT GGTGTGGATT
TGCGCTGAAA TGATGAAACA CATAAGACCA TAA
|
|---|
| Protein sequence | MINQDPVILG LLALTLGLIF YSSELPGRPW KTLYRFVPVM VMCYVVPSLF NTFHIVDMAN
SQLSFIASRY IMPACLTLLI ISVDIKSMLL LGPKIIILFF IGTLGIILGA PLTLYLFSII
SPEQLSWDGN GSTWRAMVTL AGNWVGGTAN QFAMKEIYDV EDNMFAIMIS VNVVFSALWM
AFLLMCAPHA DKIDIKIGAD VKGIRLLVDG IHLRNTKPAL LPNLKGYVFI FAVAFGVTGL
AHWGADELVP FFGQHYPESG KWSFTSHFFW IVIIVTSTSI GLSYTKIKHL EQLGASKIST
VLLYFLIATM GLKMDLTMIN DFPIYFAIGF VWLMIHALLV IIAGVLMKAP VAYMAISSQC
CIGGAASSPV VAMAFNRHLA PVAVIFSVFG YAWANYMVWI CAEMMKHIRP
|
|---|
| |