| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfri_2579 |
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| Symbol | |
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| ID | 4279486 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella frigidimarina NCIMB 400 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008345 |
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| Strand | + |
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| Start bp | 3083367 |
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| End bp | 3084446 |
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| Gene Length | 1080 bp |
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| Protein Length | 359 aa |
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| Translation table | 11 |
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| GC content | 41% |
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| IMG OID | 638135372 |
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| Product | sigma54 specific transcriptional regulator, Fis family protein |
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| Protein accession | YP_751258 |
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| Protein GI | 114563745 |
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| COG category | [K] Transcription
[T] Signal transduction mechanisms |
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| COG ID | [COG1221] Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain |
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| TIGRFAM ID | [TIGR02974] psp operon transcriptional activator PspF |
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Plasmid Coverage information |
| Num covering plasmid clones | 22 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | GTGAGCAAAC AATTCCAGCA AGACAATCTC ATCGGCCAAT CTAATGCACT ACTTGAAGTA
TTAGAACATG TGTCTAAAGT CGCGCCATTA TCTAAGCCGG TGCTCATTAT TGGTGAGCGT
GGTACGGGTA AAGAATTAAT TGCCGAACGA CTTCATTACT TATCCCCTCG TTGGGATCAA
AGTTTTATTA AACTCAATTG TTCTTCATTA AGTGAAAACT TACTCGAAAG TGAACTCTTT
GGCCATGAGT CAGGTGCATT TACGGGTGCA AAAGGACGAC ACGAAGGCCG TTTTGAGCGT
GCCGATGGTG GAACACTGTT TTTAGATGAG TTAGCCAACA CTTCCGGGTT GATCCAAGAA
AAGCTATTAC GTGTTATCGA ATATGGTGAA TTTGAACGAG TGGGTGGCAG TAAAACGGTT
CAATCTGATG TTCGACTTAT TTGTGCTGCT AATGAAGATT TACCTACTTT GGCTGATAAT
GGTGAATTTC GAGCTGATTT ACTCGACCGT TTAGCCTTTG ATGTGATCAC CTTGCCACCA
TTAAGACATA GAACCGAAGA CATTATGCCA CTAGCTGAAC ATTTTGCGAT TAGCATGGCA
AGACAACTAT CGCTGGAATA TTTCAGTGGT TTTAGCCCGC TGGCAGTAGA ACAATTAATG
ATGCACAGTT GGCCAGGAAA TATCCGAGAA TTAAAAAATG TCGTCGAGCG AAGTGTTTAC
CGCGAAGGGG CTGATGGCCA AGAAATTGAT CATATTATTT TAGATCCTTT TGCATCACCC
TATCGTCCTG TAAATCGTGT CAAAACCCGT GAGCGTCAAT CAACTCCAAT TGAACACGCT
CCAGCATCTG TGACTGAATC GACTGAGTTA AATGTTAAAA CGGAAACATC AGTCGTGCTT
AACAGCATCG AATTCCCGAT TGATTTTAAA GAATACACCG AAAACAGTGA AATAGAATTA
TTGCAACGAG CATTAGCTGA AGGCCAATAT AATCAGAAAA AAACAGCCGA TTTGTTAGGC
TTAAGCTATC ATCAGCTTCG AGGTATTTTG AAAAAGTACA ACTTACTCGA CAAGAGCTGA
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| Protein sequence | MSKQFQQDNL IGQSNALLEV LEHVSKVAPL SKPVLIIGER GTGKELIAER LHYLSPRWDQ
SFIKLNCSSL SENLLESELF GHESGAFTGA KGRHEGRFER ADGGTLFLDE LANTSGLIQE
KLLRVIEYGE FERVGGSKTV QSDVRLICAA NEDLPTLADN GEFRADLLDR LAFDVITLPP
LRHRTEDIMP LAEHFAISMA RQLSLEYFSG FSPLAVEQLM MHSWPGNIRE LKNVVERSVY
REGADGQEID HIILDPFASP YRPVNRVKTR ERQSTPIEHA PASVTESTEL NVKTETSVVL
NSIEFPIDFK EYTENSEIEL LQRALAEGQY NQKKTADLLG LSYHQLRGIL KKYNLLDKS
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