| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfri_2509 |
|---|
| Symbol | |
|---|
| ID | 4279418 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella frigidimarina NCIMB 400 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008345 |
|---|
| Strand | + |
|---|
| Start bp | 3004749 |
|---|
| End bp | 3005627 |
|---|
| Gene Length | 879 bp |
|---|
| Protein Length | 292 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 36% |
|---|
| IMG OID | 638135304 |
|---|
| Product | transcriptional regulator, LysR family protein |
|---|
| Protein accession | YP_751190 |
|---|
| Protein GI | 114563677 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG0583] Transcriptional regulator |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 29 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCATCGAT TACCACCACT ACGAGCTATA CAAGTATTCG ACTCTGTTGC ACGTAATCAA
TCTTTTTCTA TCGCGGCTTC GCAGTTGGCT ATTACTCAAG GAGCTGTGTC GAAGCAGGTA
AAACTTCTTG AAGAGTTTTA TGCTGAGAAG TTATTCATAC GTTGTGGTAC CAACATAGAA
CTGACGAAGA AAGGCACTTG GTTAGCATAT CAGTTAACGC CCATTTTTGA CCAACTTAAC
GGAATTTGCA ATTTCAATTC TATAAGTCGC GGAAAAATAC GAATTGCTAC CTACCCATCT
CTTTCACTCG GTTATCTTAC ATATGAAATT GAACAATTTA ATTCTGCCCA TCCAAATATT
GATGTCGAAA TTATATTAGC CATTAATCAT CCAACAATGT GTGATGAAAT TGCTGATTTA
TTTATTACAA CAGAAGAGAG TATTGATGGT TATCACTATC AACAACTATT TCAAGAAAGA
TTAATTCCTG TTATCAGTCC TAAAATAATT AACGATACAA CGATAATAAA GATAAAGGAT
TTGACTGGCT ACACGCTATT GGTAACGAAT GGAAAAGAGA ACTCTGATTG GCAGTTATGG
TTTAACCATC ATAATTTAAA ACCGGCAATT TACCAGAAAA TGAACATGTT TAGTGATGCA
CTATTATCAA CTAGAGCTGC AGAATTAGGC AATGGCATTG CCTTATCATG TGAGGTTACT
GCACACCGAG ATATAATTGA TGGTCGTTTG TGTAAAGTAG GACTACCATC AGCGCCAACT
GGGCGGCGCT ATTTTTTATG TTGTAAAAAT AGACGACGAT ATGAACCCAA TATCAAGTTA
CTCTCTGATT GGATTAATAA AAAATTCATT AATGATTAA
|
|---|
| Protein sequence | MHRLPPLRAI QVFDSVARNQ SFSIAASQLA ITQGAVSKQV KLLEEFYAEK LFIRCGTNIE
LTKKGTWLAY QLTPIFDQLN GICNFNSISR GKIRIATYPS LSLGYLTYEI EQFNSAHPNI
DVEIILAINH PTMCDEIADL FITTEESIDG YHYQQLFQER LIPVISPKII NDTTIIKIKD
LTGYTLLVTN GKENSDWQLW FNHHNLKPAI YQKMNMFSDA LLSTRAAELG NGIALSCEVT
AHRDIIDGRL CKVGLPSAPT GRRYFLCCKN RRRYEPNIKL LSDWINKKFI ND
|
|---|
| |