Gene Sfri_2482 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSfri_2482 
Symbol 
ID4279393 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella frigidimarina NCIMB 400 
KingdomBacteria 
Replicon accessionNC_008345 
Strand+ 
Start bp2967657 
End bp2968331 
Gene Length675 bp 
Protein Length224 aa 
Translation table11 
GC content40% 
IMG OID638135278 
Productlysine exporter protein LysE/YggA 
Protein accessionYP_751165 
Protein GI114563652 
COG category[E] Amino acid transport and metabolism 
COG ID[COG1280] Putative threonine efflux protein 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones25 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGACATGA CTTTATTGGC TGGTTTAGCG GTTATTCACA TTGTGGCATT AATGAGCCCA 
GGACCTGACT TTGCCATTAT CGTTAAAATG GCCACACAGC AAACACGCTT AACTGCGCTT 
TATTGTGCCT TAGGCATTGC TGTCGCTATC TTAATTCACA CCTTTTTGTC GTTGATGGGC 
ATCAGTGTGA TGATCCAACA GTCTCATGTT GCCTTTATGG CCGTGCAACT GATTGGCAGT 
AGCTATTTAG CATGGATGGG ATATGGGGCG CTCAAATCAG CGATCACCAG TATTATCAGC 
AAACGCCGTA ATTCAGACAT GCCATCAATG CAGCAGAATG TGGCAAAAGC GGCACTGATA 
TCATCATTAA AGGGATTTAA AATTGGACTA TATACCAACC TACTGAATCC TAAAGCATTG 
ATATTTTTTA TTACTTTATT TTCTGTATTA ATTACACCGC AAGTCAATTA CCAAACAAAA 
ATTGCCGCCA CGGTATTATT ATTTGTGTTG TCATTGGCGT GGTTTAGCTT ACTCGCACTG 
ATCCTATCAA AACCTCGAGT ACAGCAAAAA TTGCTCGCGG CCAATACCAT TATAGATCTA 
CTCGTTGGGG TTATTTTTAT TGCCGTTGCA GTCACGATTG CTAATAATAT AATTCATCAA 
ATTATCTCTC AGTGA
 
Protein sequence
MDMTLLAGLA VIHIVALMSP GPDFAIIVKM ATQQTRLTAL YCALGIAVAI LIHTFLSLMG 
ISVMIQQSHV AFMAVQLIGS SYLAWMGYGA LKSAITSIIS KRRNSDMPSM QQNVAKAALI 
SSLKGFKIGL YTNLLNPKAL IFFITLFSVL ITPQVNYQTK IAATVLLFVL SLAWFSLLAL 
ILSKPRVQQK LLAANTIIDL LVGVIFIAVA VTIANNIIHQ IISQ