| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfri_2236 |
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| Symbol | yebU |
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| ID | 4279148 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella frigidimarina NCIMB 400 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008345 |
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| Strand | + |
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| Start bp | 2680732 |
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| End bp | 2682186 |
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| Gene Length | 1455 bp |
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| Protein Length | 484 aa |
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| Translation table | 11 |
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| GC content | 41% |
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| IMG OID | 638135033 |
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| Product | rRNA (cytosine-C(5)-)-methyltransferase RsmF |
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| Protein accession | YP_750920 |
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| Protein GI | 114563407 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0144] tRNA and rRNA cytosine-C5-methylases |
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| TIGRFAM ID | [TIGR00446] NOL1/NOP2/sun family putative RNA methylase |
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Plasmid Coverage information |
| Num covering plasmid clones | 23 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGCCCAAT TAAATACAAA CTTTATCAAT CACATTGAGA AAGAGTTACC CGCTCACTTA
TCTTTACAAG AGTTTATTGC CTATTGCGAT AAACCGCTTC GTAAATCCAT TCGGGTGAAT
ACGCTTAAAA TCAGTACCGC ACAATTTGTC CACATCATGA CTAGCGCAGG CTGGCAACTG
TCTCCAGTAC CTTGGTGTGC TGACGGATTT TGGATTGAGG GTAAAGATGA TATCCAACTG
GGTAATGCTA TTGAACATAT TCAAGGGCTA TTTTATATCC AAGAAGCCAG TTCCATGCTG
CCGCCGACCG CATTATTTTC TAATGATAAC ACCGCTGAAA TTGTCTTGGA TGTCGCCTCA
GCTCCAGGCT CCAAGGCCAC TCAAATAGCA GCCTTAATGA ATAACAGTGG CTTATTAGTG
GCTAATGAAT ATTCAGCCAG CCGCGTTAAA GTATTACACG CTAACGTATT GCGCATGGGA
GCCAGCCACA CCGCCCTAAC CCATTTTGAT GGTCGAGTTT ATGGTGAATA TTTATATGAA
TCGTTTGATG CTATTTTATT GGATGCTCCT TGTGGCGGCG AAGGTACGGT TCGTAAAGAT
CCCTTGGCAT TAAAACACTG GGATATTGAT GATGTTACTG CGATTGGTGA AACCCAAAAA
GATCTTATTG AATCTGCATT TTTAGCGTTA AAGCCAGGCG GGATTTTAGT CTATTCAACT
TGTACTCTAA GCCAGTTAGA AAACCAACAT ATCTGTTATC ACTTACAGCA AACTTACCCC
GATGCAGTTG AGTTTGAGTC GCTGGCTGAA TTATTCGATG GTGCAGACAA AGCGTGCACT
GAAGAAGGTT TTTTACATGT ATGGCCACAA ATTTATGACA GTGAAGGTTT TTTTGTCGCC
AAAATTCGTA AAAAAGCCTC GGTTGAACGA GTAAAAAAAC AGCCTAAATT ACAAAAAAAC
TTTCCTTTTA ATCCCGCAAA TGAAAAGCAA AAAGCGGAGT TAACACAATA CTTTTATGAC
AGCTTCTGTC TCGAGTTACC TAGCGATGAC GTAATCATGT TGCGTGACGA TGAATATTGG
TTGTTTCCAG CCCAATTTAT GCCTTTTATC GGCAAAATGC GCTTTCAGCG TATTGGTATT
AAGCTCGCTG ATGCGATGAA AAAAGGCTAC AAAGCTAAAC ATGAAGCCGT CATTGCTTTA
TCAGCAGCAA CGCATAATCC AGCAAAAACT ATGGAATTAA GTGCGGCGCA AGCACAAGAT
TTTTTAATGG GTCGTGATAT TGCCACAAGT ACTTTTGATC AACCGACACA GCAACAGTTA
GCCATTATGC CACAAGGCGA AATGCTAGTG AGTTATCATA AAGTCGTGCT TGGGGTCGTA
AAACATTTAG GTCATAGACT TAAAAACAAT TTACCGCGTG ATTTGGTACG CGATAACGTT
AACTTATATC TATAA
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| Protein sequence | MAQLNTNFIN HIEKELPAHL SLQEFIAYCD KPLRKSIRVN TLKISTAQFV HIMTSAGWQL
SPVPWCADGF WIEGKDDIQL GNAIEHIQGL FYIQEASSML PPTALFSNDN TAEIVLDVAS
APGSKATQIA ALMNNSGLLV ANEYSASRVK VLHANVLRMG ASHTALTHFD GRVYGEYLYE
SFDAILLDAP CGGEGTVRKD PLALKHWDID DVTAIGETQK DLIESAFLAL KPGGILVYST
CTLSQLENQH ICYHLQQTYP DAVEFESLAE LFDGADKACT EEGFLHVWPQ IYDSEGFFVA
KIRKKASVER VKKQPKLQKN FPFNPANEKQ KAELTQYFYD SFCLELPSDD VIMLRDDEYW
LFPAQFMPFI GKMRFQRIGI KLADAMKKGY KAKHEAVIAL SAATHNPAKT MELSAAQAQD
FLMGRDIATS TFDQPTQQQL AIMPQGEMLV SYHKVVLGVV KHLGHRLKNN LPRDLVRDNV
NLYL
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