Gene Sfri_2229 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSfri_2229 
Symbol 
ID4279141 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella frigidimarina NCIMB 400 
KingdomBacteria 
Replicon accessionNC_008345 
Strand- 
Start bp2673418 
End bp2674029 
Gene Length612 bp 
Protein Length203 aa 
Translation table11 
GC content40% 
IMG OID638135026 
Productputative solute/DNA competence effector 
Protein accessionYP_750913 
Protein GI114563400 
COG category[T] Signal transduction mechanisms 
COG ID[COG3109] Activator of osmoprotectant transporter ProP 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones16 
Plasmid unclonability p-value0.180207 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGAATCAA CAGACAAGTT GACCGACACC AACGCAATTT TAGCGTATTT ATATGAAACC 
TTTCCTTTAT GCTTTATTGC AGAAGGTGAA ACTAAGCCAT TAAAAATTGG TTTGTTTCAA 
GATTTGGCTG AACGGTTAGC TGATGATTCT AAAGTCAGTA AAACACAATT ACGTGTAGCG 
CTTCGTCGTT ATACAAGTAG CTGGCGCTAT TTGAAAGGCG TAAAAGCAGG TGCTAAACGT 
ATAGATCTTG ACGGTAATGA ATGTGCTGAA TTAGAACAAG AGCACATTGA CCATGCTATT 
TTGACGCTTA AAGAAAGCCA AGATAAAGCC AAAGCAAAGC GTCAAGCCTT AGCGCCTAAA 
AAGCCGGCGA AGAAAGTGGC ACCTAAACGT GCACCAGCCG TTAAAAAGGA ACGTCCTGCA 
CCGGTAGCTG CTCCAGTGAT TAAACTTGTG CCTGCTAAGC TAGAAGATTT AAAACAAAAA 
CAACGCGTTA ATGTTAAATT AGGTGCCACA CCTGTTCCTG GTGTTGTAAC TGATATTAAT 
AAAGAGGATG TGCTTGTTCA ATTAGATTCT GGCTTATCCA TCAAAGTACG TGCAGAGCAC 
ATACTATTAT AG
 
Protein sequence
MESTDKLTDT NAILAYLYET FPLCFIAEGE TKPLKIGLFQ DLAERLADDS KVSKTQLRVA 
LRRYTSSWRY LKGVKAGAKR IDLDGNECAE LEQEHIDHAI LTLKESQDKA KAKRQALAPK 
KPAKKVAPKR APAVKKERPA PVAAPVIKLV PAKLEDLKQK QRVNVKLGAT PVPGVVTDIN 
KEDVLVQLDS GLSIKVRAEH ILL