| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfri_2165 |
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| Symbol | |
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| ID | 4279077 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella frigidimarina NCIMB 400 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008345 |
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| Strand | - |
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| Start bp | 2584271 |
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| End bp | 2586505 |
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| Gene Length | 2235 bp |
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| Protein Length | 744 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 638134955 |
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| Product | glycogen branching enzyme |
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| Protein accession | YP_750849 |
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| Protein GI | 114563336 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG0296] 1,4-alpha-glucan branching enzyme |
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| TIGRFAM ID | [TIGR01515] alpha-1,4-glucan:alpha-1,4-glucan 6-glycosyltransferase |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACTGTAG CGACCCCGTA TTTTCAACAA GGTAGTGAAA TAGCCTTATT AAATGGTGAG
TACACAGATG TGTTTTCACT GCTTGGCATG CACAGTGTTA ATGATGGTAA AGCGCTGGTT
GTCCGTTGCT TAATACCTGG TGCGATCAGT GTTGATGTGT TGAGCGCTAA GGATGGACGT
AAAGTGGCAA CACTTGAGCA AGTAAACGAG CACGGTTTAT TTGCCGGTAA AATGGGCCGA
AGAGTGAAAT CTTTCGCTTA TTTATTACGG GTACAATATC CCTTGTGTGA GCAACTTATT
AACGATCCAT ATCAATTTGA CAGCTTACTC AACCCTGATG ACGTGTATTT ATTTGGCGAA
GGAAGCCAGT TGCAAACATA CCATTTTCAG GGGGCTAATT GGCGCGAGCA TCACGGTGTG
AAAGGGGTTC ATTTTTGTGT TTGGGCGCCT AATGCTAAGC AAGTTGCGGT GATGGGTGAT
TTTAATTTAT GGGACAATAA GCGCCATATA TTGCGTCACC ATCCAGCCAG TGGGCTGTGG
GATATTTTTA TTGCTGAGGT TGAGCCCGAA CAACACTATA AATACGCCAT TAGCGATATG
CATGGCAATC AAGTTATTAA GTCCGATCCT TACGCGGTCG CCATGCAACC ATCACCTCAT
AATGCCTCGA AAATCCCTCA TGTCGAACGT TACGACTGGC AAGATAGTCA ATGGTTAGCA
GATCGGGCAA GTCATCAGCC ACACGTACAA CCTATGTCTA TCTATGAGGT GCAATTAGCA
TCGTGGCGAC GCAAGGGGGA TGACAGCCAG GAATATACTG ATTACTCGCA GTTAATTGCC
GAGTTGGTGC CTTATATCAA AGAGATGGGT TTTACCCATT TACAGTTAAT GCCAATCAGT
GAATATCCGT TTGATGGCTC TTGGGGATAT CAACCCGTAG GGTTATTTGC CCCTACGTAT
CGCTTTGGTG ATGCCAATGG CCTTAGAGCT TTTATTGATG AATGCCACCA GCAAGGCATT
GCGGTGTTAC TCGATTGGGT GCCAGCACAT TTTCCTCGCG ATCCTCATGG CTTGGTGCGA
TTTGACGGTA GTTGCTTGTA TGAACATGAT GATCCCCGCA AAGGCGAACA ACCGGATTGG
GACACACTAA TTTATAATTA TGGCCGCGCA GAAGTACGCA GTTTTTTATA CAGTAATGCC
CATTACTGGT TAGATGAATT TCATTTTGAT GGCTTAAGGC TTGATGCTGT ATCGTCTATG
CTCTACCTCG ATTACAGCAG AAGAGCGGAT CAATGGATCC CAAATAAATT TGGCGGTCGT
GAAAACCTTG AAGCTATCAG CTTTCTACAA GAATTAAATG CGCGCATGTA CCAATGCTTC
CCAGGCATTA ACATGATTGC TGAAGAGTCC ACCGCATGGC CAGGTGTGAC GCAAGCAACC
AGCAATAATG GCTTAGGATT CGGTTTTAAG TGGAATATGG GCTGGATGAA CGACACTCTG
CGTTATATCA GTTGCGATCC CCTTTTTAGG CGTTATCACC ATGGTGAACT TACTTTTAGC
TTGGTGTATG CCTTTACGGA ACAATTTATT TTGTCACTCA GTCACGATGA AGTAGTTCAC
GGCAAGGGGT CGTTACTGCA TAAAATTCCG GGTGATGACT GGCAGAAGTT CGCCACATTA
CGTGCTTATT ATGGCTTTAT GTGGACTCAT CCTGGCAAAA AATTATTGTT TATGGGTAAC
GAATTTGCCC AGCGCAACGA ATGGAACCAT AACCAGAGCC TAGACTGGCA TTTATTAACC
TATGCACCAC ATCAAGGTGT GCAAGATTGG GTGCGCGATC TCAATCAATG CTATCAACAA
TATCCTGCAT TATATCAACG CGATCATCAT AGCGACGGTT TCCAATGGCT CGACTGCAAC
AATGCTGACA ATAACATTTT GGTGTTTTGC CGTTTTGGAA TGGACAAGCA ACAACATGTC
GTGATTGTGG TCAACATGTC TCCACAGGTT TATTACGACT TCAGAGTGGG TGTACCCACG
GCGCAAAACT ATCGCGAATT GCTTAACAGC GACCATCGCC ACTATGGTGG CGGTGATGTC
GTCAATGATA ATCCCTGTGA AGCTCAGGTT ACTCCATGGC AGGGCATGTC ACACAGTATT
GTTATCACAG TACCACCGTT GGGTTGCAGT ATTTGGGTTC CAGAACTAGA CGAACAAGAT
CAGCCTACGC AATAA
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| Protein sequence | MTVATPYFQQ GSEIALLNGE YTDVFSLLGM HSVNDGKALV VRCLIPGAIS VDVLSAKDGR
KVATLEQVNE HGLFAGKMGR RVKSFAYLLR VQYPLCEQLI NDPYQFDSLL NPDDVYLFGE
GSQLQTYHFQ GANWREHHGV KGVHFCVWAP NAKQVAVMGD FNLWDNKRHI LRHHPASGLW
DIFIAEVEPE QHYKYAISDM HGNQVIKSDP YAVAMQPSPH NASKIPHVER YDWQDSQWLA
DRASHQPHVQ PMSIYEVQLA SWRRKGDDSQ EYTDYSQLIA ELVPYIKEMG FTHLQLMPIS
EYPFDGSWGY QPVGLFAPTY RFGDANGLRA FIDECHQQGI AVLLDWVPAH FPRDPHGLVR
FDGSCLYEHD DPRKGEQPDW DTLIYNYGRA EVRSFLYSNA HYWLDEFHFD GLRLDAVSSM
LYLDYSRRAD QWIPNKFGGR ENLEAISFLQ ELNARMYQCF PGINMIAEES TAWPGVTQAT
SNNGLGFGFK WNMGWMNDTL RYISCDPLFR RYHHGELTFS LVYAFTEQFI LSLSHDEVVH
GKGSLLHKIP GDDWQKFATL RAYYGFMWTH PGKKLLFMGN EFAQRNEWNH NQSLDWHLLT
YAPHQGVQDW VRDLNQCYQQ YPALYQRDHH SDGFQWLDCN NADNNILVFC RFGMDKQQHV
VIVVNMSPQV YYDFRVGVPT AQNYRELLNS DHRHYGGGDV VNDNPCEAQV TPWQGMSHSI
VITVPPLGCS IWVPELDEQD QPTQ
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