| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfri_2142 |
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| Symbol | |
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| ID | 4279054 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella frigidimarina NCIMB 400 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008345 |
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| Strand | + |
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| Start bp | 2548870 |
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| End bp | 2549550 |
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| Gene Length | 681 bp |
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| Protein Length | 226 aa |
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| Translation table | 11 |
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| GC content | 41% |
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| IMG OID | 638134931 |
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| Product | haloacid dehalogenase, type II |
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| Protein accession | YP_750826 |
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| Protein GI | 114563313 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG1011] Predicted hydrolase (HAD superfamily) |
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| TIGRFAM ID | [TIGR01428] 2-haloalkanoic acid dehalogenase, type II
[TIGR01493] Haloacid dehalogenase superfamily, subfamily IA, variant 2 with 3rd motif like haloacid dehalogenase |
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Plasmid Coverage information |
| Num covering plasmid clones | 4 |
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| Plasmid unclonability p-value | 0.00000781607 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAACATGC AAAAAATGAT TGGATTTGAT GTTTACGGCA CATTAGTGGA TCCTGTGGAT
ATGGGCCAGC ATCTGCAACA ATTGATTGGC GACAAGGCAC AAGAATTTGG TCAATTATGG
CACGATAAAA AAGTCGAATA TGCATTTCGT CGTGGCTTAA TGCAACAATA TGAAGATTTC
GGTGTGTGTA CTCAACAAGC TCTGCAATAT TGTTTATCTG TTTTCAACGT CACACTGTCA
AAAAGCGAAC AACAAGATTT ACTGGCTAAA TTTAGTCAAC TCAAGGCCTT TGATGATGTC
ATTCCTGGAC TAGCATTACT GCGCAATCAA GGTCATACCT TGGCCGCTTT TTCAAATGGA
CCAGAAGTTG CGGTTCGTAC ACTTATGCAA AACTCGGGCG TTTTACCTCA ACTACATGAC
GTTATCAGTG TCGATGATCT AAAGACATTT AAACCTAACC CTGCTGTTTA CGATTATTTA
ATGACTCGTA CTCAATCTGA CCTCAATCAT TGTTGGATGG TGTCGAGCAA TCCATGGGAT
GTCATTGGTG CGAAAGCCGC CGGACTGAAT ACAGCTTGGA TCCAAAGAGA CAGTAAAAAA
ATATTTGATC CTTGGGGCAT TGAGCCTGAC ATCACCGTCG GTAATTTAAT CGAATTAAGT
GAACAGCTCG ATTCCCTGTA A
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| Protein sequence | MNMQKMIGFD VYGTLVDPVD MGQHLQQLIG DKAQEFGQLW HDKKVEYAFR RGLMQQYEDF
GVCTQQALQY CLSVFNVTLS KSEQQDLLAK FSQLKAFDDV IPGLALLRNQ GHTLAAFSNG
PEVAVRTLMQ NSGVLPQLHD VISVDDLKTF KPNPAVYDYL MTRTQSDLNH CWMVSSNPWD
VIGAKAAGLN TAWIQRDSKK IFDPWGIEPD ITVGNLIELS EQLDSL
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