| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfri_2111 |
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| Symbol | |
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| ID | 4279023 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella frigidimarina NCIMB 400 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008345 |
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| Strand | + |
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| Start bp | 2513594 |
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| End bp | 2514721 |
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| Gene Length | 1128 bp |
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| Protein Length | 375 aa |
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| Translation table | 11 |
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| GC content | 44% |
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| IMG OID | 638134900 |
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| Product | hydrogenase expression/formation protein HypD |
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| Protein accession | YP_750795 |
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| Protein GI | 114563282 |
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| COG category | [O] Posttranslational modification, protein turnover, chaperones |
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| COG ID | [COG0409] Hydrogenase maturation factor |
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| TIGRFAM ID | [TIGR00075] hydrogenase expression/formation protein HypD |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 0.304597 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGATTAGCC TCAATGACTT TTATCAAGGA TTTCGAGATC CTCAGACAAT TCGTCATTTA
GCGCAATTGA TTGCTCAACA AGCGGCTAAA ACGACTGAGC AAATTAACAT TATGGAAGTG
TGTGGTGGCC ATACCCATAC CATTATGAAG TACGGTTTAT TACAGCTATT ACCCGACAAT
ATTCACTTTA TTCATGGCCC AGGCTGTCCA GTGTGCGTTA TGCCTAAAGA ACGAATTGAC
CATGCAGCCA CCCTTGCCTC ACAAGCCGAT ACCATTTTAG TCACCCTAGG CGATATGATT
AGAGTGCCGG GTTCAATGGG TAGCTTGGCG CAATTTCGGG CTAAAGGCTG CGATATTAGG
CCAATATATG ACCCATTAGA TACCTTAAAA ATTGCCCAGG ATAATCCTGA CAAAACGGTG
ATTTTTTTCG CTATTGGTTT TGAAACCTCT ACGCCTATGA CTGCCGCCTT ACTGGCACAG
GCTGAAGCGT TGAAAATAGA TAATATCTTG TTTCATATAA ACCATGTGCT GGTTCCACCT
GCTATTGATG CTGTGATGTC TGATAGTCGC AGTAAAGTAA ACGCTTTTAT CGGTCCGGCC
CACGTAAGCG TGATTAGTGG TGCTCAAATC TACCAATCTA CAGTCGACCA ATATAAAACA
CCTGTTGTGG TGTCTGGGTT TGAACCGGTA GATGTGATGG AATCTATTTT ACGTATTACA
CGTCAAAAAG TGGCAGGCAA AGCAGAGCTA GATAACCAAT ACAGTCGTTC AGTGAGTTAC
GAGGGCAACA TTGCCGCTCA ACAACTGGTC GACAAATATT TTATGGTCCG CGACAGCTTT
CGCTGGCGCG GACTAGGCCC TATTGCCAAG TCTGCTCTAA CATTACGCCC TGAATATCAT
CATCGAGATG CCGAACGCAT TTATGCAAAA GTATTACCGA CTACCGAAAT TGACGACCAT
AAAGCCTGTA TGTGTGGCGA TATTTTGCGA GGCTTAGCCA ATCCTAAAGA CTGCAAAGTG
TTTGGCAGAG GTTGCTCACC ACAAACACCG CTAGGCAGCT GCATGGTTAG CTCAGAAGGC
GCGTGTAATG CTTATTACCG CTATGGAGAA GTTAATCATG ACATCTAA
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| Protein sequence | MISLNDFYQG FRDPQTIRHL AQLIAQQAAK TTEQINIMEV CGGHTHTIMK YGLLQLLPDN
IHFIHGPGCP VCVMPKERID HAATLASQAD TILVTLGDMI RVPGSMGSLA QFRAKGCDIR
PIYDPLDTLK IAQDNPDKTV IFFAIGFETS TPMTAALLAQ AEALKIDNIL FHINHVLVPP
AIDAVMSDSR SKVNAFIGPA HVSVISGAQI YQSTVDQYKT PVVVSGFEPV DVMESILRIT
RQKVAGKAEL DNQYSRSVSY EGNIAAQQLV DKYFMVRDSF RWRGLGPIAK SALTLRPEYH
HRDAERIYAK VLPTTEIDDH KACMCGDILR GLANPKDCKV FGRGCSPQTP LGSCMVSSEG
ACNAYYRYGE VNHDI
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