| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfri_2109 |
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| Symbol | |
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| ID | 4279021 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella frigidimarina NCIMB 400 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008345 |
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| Strand | + |
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| Start bp | 2512633 |
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| End bp | 2513352 |
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| Gene Length | 720 bp |
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| Protein Length | 239 aa |
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| Translation table | 11 |
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| GC content | 41% |
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| IMG OID | 638134898 |
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| Product | hydrogenase accessory protein HypB |
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| Protein accession | YP_750793 |
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| Protein GI | 114563280 |
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| COG category | [K] Transcription
[O] Posttranslational modification, protein turnover, chaperones |
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| COG ID | [COG0378] Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase |
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| TIGRFAM ID | [TIGR00073] hydrogenase accessory protein HypB |
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 0.432968 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGTGTAAAG ATTGCGGCTG TTCAATTACC CATGATCATG ACCATACTCT TCATAGTAAT
CCTCAGCTTA ACGATAAAAA GACCTTAGCG GTTATCCATA AAATACTGGA TAAAAATGAT
GTCGAAGCAC AGCATAATCG TGATCATTTT GCGGCTCATC AGGTCAGCGC CTTTAATCTA
ATGAGTAGCC CTGGCAGCGG TAAAACCAGT CTTTTAGAAT GTTTACATGA ATACCTTGAT
GCTCGCTATG CCGTAATTGA AGGCGACCTT GAAACCTCAC GCGATGCCGA CCGTTTAATT
GCCAAGGGTA TCAACGCCTA TCAAATCCAA ACTGGCTCTG CCTGTCACCT TGATGCATTT
ATGGTTCACG GCGCACTGCA TCACATTAAT TTAGATAATG TTGATATTTG CTTCGTTGAG
AACGTGGGAA ATCTTGTGTG TCCTGCCAGT TATGATGTTG GCACCCATAA AAATATTGTG
TTGTTATCTG TGCCTGAAGG TGACGATAAA ATTGAGAAGT ATCCGGTGAT GTTCCGCCGA
GCTGACTTAG TGGTTATCAC TAAATCTGAC CTACTTCCTT ACTTTGACTT TAGTATTGAT
GAAGCCAAAG CACAGTTAAG TAAATTGAAT CCAGATGTCG AATTGCTCGT CGTGTCAGTG
AAAAATCCTG ATTCAATGAA AGTATTGGCA ACATGGTTTG ATGAACATAA GGAATATTAA
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| Protein sequence | MCKDCGCSIT HDHDHTLHSN PQLNDKKTLA VIHKILDKND VEAQHNRDHF AAHQVSAFNL
MSSPGSGKTS LLECLHEYLD ARYAVIEGDL ETSRDADRLI AKGINAYQIQ TGSACHLDAF
MVHGALHHIN LDNVDICFVE NVGNLVCPAS YDVGTHKNIV LLSVPEGDDK IEKYPVMFRR
ADLVVITKSD LLPYFDFSID EAKAQLSKLN PDVELLVVSV KNPDSMKVLA TWFDEHKEY
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