| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfri_2092 |
|---|
| Symbol | |
|---|
| ID | 4279004 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella frigidimarina NCIMB 400 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008345 |
|---|
| Strand | - |
|---|
| Start bp | 2490221 |
|---|
| End bp | 2491282 |
|---|
| Gene Length | 1062 bp |
|---|
| Protein Length | 353 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 37% |
|---|
| IMG OID | 638134881 |
|---|
| Product | aminotransferase, class V |
|---|
| Protein accession | YP_750776 |
|---|
| Protein GI | 114563263 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG1104] Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 0.935088 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAATGCTT TTGAGACATT TTATGCAAAT TCAGCATCCA GTCATTTAAT GGGTTCAATT
GTTCAAAAAG AAATTGATCA AGTAAGAGAA AAACTAGCGG ATTCAATTGG CGCTTATCCA
AGTGAAATTG TGTTTACTAG TGGCGCAACG GAATCAAATA ACATCGCTTT TAAAAGCTTG
CTGTTAAGTG GTGACATCCC TACAGGAAAA AACCATATAG TCACATCCAC AATTGAGCAC
AAGTGCGTAT TAGCGATATG TGATTATTTT AAATCGATTG GTTTTGAAGT GACTTACATT
AAACCTAATG TAGATGGCAT TATTTGCCCG AATGATGTTA AGGATGCCAT TAACGAAAAA
ACGGCATTAG TGTCAATCAT GCACGTTAAT AACGAATTAG GCACAATTAA TCCGATTGGT
GAAATCGGTA AATTATGCTC TGAAAACAAT ATTATATTCC ATTCAGATGC AGCCCAGAGT
TATGGAAAAA CAGAGATCGA TGTCGATAAT TTTAATATAG ATGTCATGTC ATTTTCAGCA
CACAAAGTCG GTGGCCCAAA AGGCATTGGC GCGATCTACA TACGAGATTT ACGCCACAGA
AAACTTTTGC CAGTTATTCA TGGCGCTGGC CAAGAGCAAG GTTTGAGGGG CGGAACAATT
GCTGCGCCTT TGATTATTGG TTATGGAACC GCAATTGATT TATTCCCGAA ATATTACCAA
TCGTTTTCTG AAATGCGCAT AAAAGAGTAC TTAATTGAAG GGCTCAGTAA TGAAGGGATT
GGCTTTAACA TAAATGGCCG AACTAAAGCC TTACCTCATT GTTTGTCCTT AACACTTTTG
AATACCAACG TAGCGTTAAT GATCAGAGAA AATGATCAGA CAATTAGTTT AGCTCAAGGC
TCAGCTTGTT CTTCAAAAGA AATCGAAGCT TCGCATGTAT TAACATCTCT AGGTTTAACG
CGTGAACAAG CTGAAGGTAC TATTAGACTT AGTTTTCCAC TTGATGTGAC ATTTGAACAA
ATTGATATAT TTATCAAAGC TGTAAAAAAA GCGACTAGAT AG
|
|---|
| Protein sequence | MNAFETFYAN SASSHLMGSI VQKEIDQVRE KLADSIGAYP SEIVFTSGAT ESNNIAFKSL
LLSGDIPTGK NHIVTSTIEH KCVLAICDYF KSIGFEVTYI KPNVDGIICP NDVKDAINEK
TALVSIMHVN NELGTINPIG EIGKLCSENN IIFHSDAAQS YGKTEIDVDN FNIDVMSFSA
HKVGGPKGIG AIYIRDLRHR KLLPVIHGAG QEQGLRGGTI AAPLIIGYGT AIDLFPKYYQ
SFSEMRIKEY LIEGLSNEGI GFNINGRTKA LPHCLSLTLL NTNVALMIRE NDQTISLAQG
SACSSKEIEA SHVLTSLGLT REQAEGTIRL SFPLDVTFEQ IDIFIKAVKK ATR
|
|---|
| |