| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfri_2078 |
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| Symbol | |
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| ID | 4278990 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella frigidimarina NCIMB 400 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008345 |
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| Strand | + |
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| Start bp | 2466343 |
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| End bp | 2468583 |
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| Gene Length | 2241 bp |
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| Protein Length | 746 aa |
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| Translation table | 11 |
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| GC content | 42% |
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| IMG OID | 638134867 |
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| Product | peptidase U32 |
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| Protein accession | YP_750762 |
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| Protein GI | 114563249 |
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| COG category | [O] Posttranslational modification, protein turnover, chaperones |
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| COG ID | [COG0826] Collagenase and related proteases |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.292848 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAATAGAA AAATCGAATT ATTGGCACCC GGTGGAGATG TCGATGCGAT CAAAGCTGCG
ATAATAGCCG GTGCAAACGC CGTTTATTGT GGCTTAGATA CCTTCAACGC CCGTAACCGT
GCAGCAAACC TATCATTCGA TGACTTAATT GGTGTTATCG CGCTTGCACA TCAATATCAG
TGTGAAGTGT TTCTTACTAT GAACATCGTT ATTTTAGAAA ACGAAGTTCC GACATTGGTT
AAATTGCTCA ATCAGCTTGT GAATACGGGT ATCGACGGTA TTATCGTCCA GGATTTAGGC
CTGTTTAATC TAGTGACTAA ACATTTTCCA AGCCTAGCAA TTCATGCCTC AACCCAGCTG
ACAACTCATA ACGAAGGTCA AATTGGCTTC TTAGCCAAAA TCGGCGCCAC TCGAGTCAAT
TTATCTCGTG AGCTAAACCT TGGCGAAATT AAAAGCCTCA CCACCCTCGC CCACGATCAC
GAAGTGCTTA CCGAAGTTTT TGTTCACGGT GCATTATGTA TCGCCTTCTC TGGTCAATGT
TATTCAAGCT CAGTGAGTGT TGGTAATTCT GGCAACCGTG GCCGTTGTAG CCAGGCATGT
CGTGACGAAT ATGAAGTCAC AGCTGCGGGC AACAAATTTC CGCTGAATCT AAAAGACAAC
TCAGCTTACT TTGATTTACC AGAATTGGTT GATGCCGGTG TTGACTCACT CAAAATTGAA
GGCCGCATTA AAGGTGCACA ATATGTGCAT ACCGTGGTGG ATAGCTGGCG TAAACAGATC
GACAAATTTA TCGAAACTGG CAAGCTATTA GCCGATGACT CGAACTTACA TAAAGTATTC
AACCGTGATT TTACCAACTC GTTTTTAAAG GGTAACCTCA CCAAAGACAT GTTTATCGAC
AATCCACGCG ATAACAGCTT TAAACATGCT AACGATAAAA GTAACGCGAT ATCAGTGGTT
CAAATTCAAG AAGCGCAACA AACACTGTCG TCAGAAAAAG ACGCCATTGT GCAACTGGTT
GCCGAAAAAA TTAATCACCT GAGCATTGCC AAGCCAACGT TAGCACTGGC ATTTTCAGGT
CAAGTTGATC AACCATTGTC GATCACGGTG ACCACGCCAG ACCAACACTT TGTGATTGAA
TCATCTATCT CTCTAACCCA AGCGACAGAA TCGCGGGTTG ATGAAGCGGC CATTGAGAAA
CGCTTTAAAA GCTTAAAAGG CAGTGGTTAC TTGTTACAAG CGTTTAATTA TGACGGCTTG
CAGGCTGATT TAAGCCTACC ATTTAGTCAG TTAACTCAGC TTAAAAACCA ACTGTTATTA
CAGCTAACAC AAAGAGAATA CATAGGTGCA GTAACCTTAC CCAAGTTACC TAAGCATCCT
AAAGTAACAG AAACACCGAC ATTATCTTTG CTTATTAGTG ATGAAAAAGA CGTCAACTTA
TGTGATGTTA CCGATGCCGA CATCTACTTT AAGCTGCCTG AAAGCTTTAA GAAAAACGAC
AACAAGTATA TTGATATCTT TTTACGCAAC CCAAGATTAA TCCCGTGGTT TCCGGCTGTG
CTTATTGGCA AAGATTACAT CGAAGCAGTA AGAGTGTTAG AAGTGGTTAA GCCTAAGCGA
ATTGTTACTA ACAATACCGG CGTCGCGTTT AAAGCTTATG AAATGGACAT TGAGTGGATC
GCAGGCCCGT TTTTAAACAC CACTAACTCT TATGCCTTGC TGACATTACA AGAGCAATTG
AATTGTGCTG GTGCGTTTAT TTCGAACGAG ATTAATCGTA ATCAAATTAA AAACATCGCC
AGGCCGGAAA ACTTCAAACT GCTTTACAGC ATCTATCACC CAATTTTGAT GATGACCAGC
AGACAATGCT TTTTCCAACA AACGGTAGGC TGTAATAAGC CCAGCATTGA AGACGGTTGC
ATGCTCAAGT GTGAAAAAGC CACTACCATC ACTAATGTGA AAGGTATTTC GTTTGCAGTA
GACAAACAAA AAGGCGGTTA CCCGAGCATC TATAACCACG AGCAGTTTTT AAACATCGAA
GCTGTTGAAG ATTTATCACA CTTATTCGAT GAGTTCTTTA TCGATCTCAC CAACATAGGA
TCTGGCTCAA AAGCCGAAAT AGATAAAACT CAGCTGGTAA CCCACTTCGA AAATGTCCTT
AAAGGCGTTA GCGAATCGAA ACTAGAGTTA AATCAACTGG TGACCATTTC GACTAATGCC
CAGTATCAGC AAGGTTTATA A
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| Protein sequence | MNRKIELLAP GGDVDAIKAA IIAGANAVYC GLDTFNARNR AANLSFDDLI GVIALAHQYQ
CEVFLTMNIV ILENEVPTLV KLLNQLVNTG IDGIIVQDLG LFNLVTKHFP SLAIHASTQL
TTHNEGQIGF LAKIGATRVN LSRELNLGEI KSLTTLAHDH EVLTEVFVHG ALCIAFSGQC
YSSSVSVGNS GNRGRCSQAC RDEYEVTAAG NKFPLNLKDN SAYFDLPELV DAGVDSLKIE
GRIKGAQYVH TVVDSWRKQI DKFIETGKLL ADDSNLHKVF NRDFTNSFLK GNLTKDMFID
NPRDNSFKHA NDKSNAISVV QIQEAQQTLS SEKDAIVQLV AEKINHLSIA KPTLALAFSG
QVDQPLSITV TTPDQHFVIE SSISLTQATE SRVDEAAIEK RFKSLKGSGY LLQAFNYDGL
QADLSLPFSQ LTQLKNQLLL QLTQREYIGA VTLPKLPKHP KVTETPTLSL LISDEKDVNL
CDVTDADIYF KLPESFKKND NKYIDIFLRN PRLIPWFPAV LIGKDYIEAV RVLEVVKPKR
IVTNNTGVAF KAYEMDIEWI AGPFLNTTNS YALLTLQEQL NCAGAFISNE INRNQIKNIA
RPENFKLLYS IYHPILMMTS RQCFFQQTVG CNKPSIEDGC MLKCEKATTI TNVKGISFAV
DKQKGGYPSI YNHEQFLNIE AVEDLSHLFD EFFIDLTNIG SGSKAEIDKT QLVTHFENVL
KGVSESKLEL NQLVTISTNA QYQQGL
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