| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfri_2040 |
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| Symbol | |
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| ID | 4278952 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella frigidimarina NCIMB 400 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008345 |
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| Strand | + |
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| Start bp | 2417088 |
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| End bp | 2419535 |
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| Gene Length | 2448 bp |
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| Protein Length | 815 aa |
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| Translation table | 11 |
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| GC content | 42% |
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| IMG OID | 638134829 |
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| Product | TonB-dependent receptor |
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| Protein accession | YP_750724 |
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| Protein GI | 114563211 |
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| COG category | [P] Inorganic ion transport and metabolism |
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| COG ID | [COG1629] Outer membrane receptor proteins, mostly Fe transport |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.862919 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAATAATA AATCAACATG TTTTAAGCAA TCTTTACTCG CATTTGCGAT TATGGGTGTA
ATAAGTTCAG CAGCAAATGC TGAAGACGCA AAACAAAAAC CACAAAAAAA TGCTGACGAT
ATAGAAAGAA TTGTCGTAAC AGCATCTAAA CGTGCCAAAG GATTACAGGA ATCACCTGTT
GCCATTACGG TAGTAAGTAG CAAAGCAATA GAACAAGCTA AAGTAATGGA TATAACAGAT
TTACAAACCC TCGTTCCGAC GCTACGCGTC ACCCCATTAC AACGCTCTAC TAACACTAAC
TTCTCTATTC GTGGCTTTGG TAATGGCACT AACAATACGG GTATTGAGCC TTCTGTTGGG
GTATTTATCG ATGGTGTGTA TCGCTCCCGA GCGGCCTCTC AAATAGGTGA TTTACCAAGG
CTGCAGCAAA TTGAAGTCTT AAGTGGCCCG CAAAGTACCT TATTTGGTAA AAATGCTTCC
GCTGGGGTCA TTAGCGTTAC CACTCGAGAA CCGGCTTATT ATCAAGAAGG CAAGATTGAA
GTTGGCGTAG GCAATTTCAA CCAAAAAGAA ATTAAAGGTT ATTACACCAA TGGTATAACG
GATAATTTGG CATTCAGTGT TTCAGGTGGT GTAAACACCC GTGATGGTTT TACTGAAAGT
GTAGTGGGAT TAGACGATAT TAACGACCGT GACCGTTGGA ATATTCGAGG TCAGGCACTG
TACGAGCCAA CTGAAGATGT AAAACTTCGC TTAATTGCAG ACTATAGCAA AATTGAAGAA
GCCTGTTGTT CTGTCGAAAA CTCAATTAAT GGCCCTACTA CCGCTGCAGT TCGTGCGCTC
GGTGGTATGG ATCTTGATGA AACCGGATCA TTTGCTTATC AATCTACCCT TAACTCAGAT
CCAGACAATA ATGTAAAAGA CAGTGGTGTA TCACTGCAAC TTGATGTTGA TTTTGATGGT
TATTCATTTA CATCCATCAG TGCACTTCGT ACCAATGATT CTGATTTTAT GAATGATGTC
GATTACACCT CTCTCGATAT ATTAAATGAA GGCGGTTACA CCGATATCGA AACGATTACT
CAAGAGTTTC GTTTAACGTC TACCGGAGAT CGTCAGCTAG AATGGATGTT TGGCGCCTTC
GTTTTTCATG AAGAGGTCAC CACTGGCGAT ACCTTATATT ATGGTAACGA CATTAGAAAT
TACTTTGATG TATTGATGGC TGCTGGTGGC GCTCCAGGTT TATTAGCCGG AGTAGAAGGT
GCTTATGGCT TAGATCCCGG TACATTTTTC TCAGGTGATT CGGCCGTAAG TTCTGAGTTT
GAACAAGAAA ATGATGCTTA CTCGATCTTT GCCAGCTTTG ATTACCATAT CAACGACGAT
TTTACCGCGA TATTTGGTGT GAGTTACACC AACGATCAAA AAGAAATCAA CATTAGCCAA
CAACATTCCG ATGTACTTTC AGCGCTTGAT TTAGCCACAG TGCCAACATT ATATGGTGTG
CCGATTGGCA GTATTCCTCA GCTTGCACCT GCTGTACCGG TTATTGAAAG TTTACAGTTT
TTACCGCCTA TGTTGGGATT GCCTAATGCT GTAGAAAACA ATAAGTCTGA TGACAGTAAA
ACCACTTGGT CGCTGCGCTT ATCGTACGAA ATCACCGACA ATGTCAATAT TTTCGCTACT
GCAGCTACAG GTTTTAAAGC CACGTCTTGG AATTTATCGC GTTATTCAAG TCCTTTCGCA
TCAGATCAAT CAGCATTAGA AACAGCAGGC ATAGCACTTC CCAATCAGGT TTATGGTGGC
CGATATGCCT CTCCCGAAGA AGCGCTGGTG TATGAGTTGG GTATTAAAAC TCAATTTGAA
CATGGATCAT TTAGCGCAAC GATATTTGAT CAAACCATTG AAGGGTTTCA GTCATCTATT
TTCATTGGCA CGGGCTATGT TCTTGCCAAT GCGGGTAAAC AAAGTACTCA AGGCCTTGAG
TTCGACTCTA ACTATAACCT CACTGAAGAT TGGTCATTTA CCTTAGCAGG TACCTTCCTT
GACCCTGTAT ACGACTCATT TGTTGGCGCA TCGGGTTTAG ACGGTCCAGT TGATTTATCT
GGTGAAAAAC CTGCCGGTAT CCATGAAGTG AGTATCACTG CTGGTATCGT GTATAACTTT
GAAGTGTTTA ACGGTGCAGA TGGTTACATT CGTACCGATT ACCTTTTCGA GAGTGATACT
AAACTGGCTG AAAATACTCC TGAATCATTA TCTCGCGAGG TAAACACCTT TAACGCAAGT
ACAGGACTAG CGTTTGATAA TGGCGTTAGT TTACAGCTTT GGGTGCGTAA CTTAACCAAC
GATGAGTATC TGTTGTCGGC ATTTCCACCT CCAATTCAAG CGGGCAGCTT TAATGGTTAT
CCAAATCAAC CTCGGACCTT TGGAGCCAAT ATTTCGTACC AGTTTTAA
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| Protein sequence | MNNKSTCFKQ SLLAFAIMGV ISSAANAEDA KQKPQKNADD IERIVVTASK RAKGLQESPV
AITVVSSKAI EQAKVMDITD LQTLVPTLRV TPLQRSTNTN FSIRGFGNGT NNTGIEPSVG
VFIDGVYRSR AASQIGDLPR LQQIEVLSGP QSTLFGKNAS AGVISVTTRE PAYYQEGKIE
VGVGNFNQKE IKGYYTNGIT DNLAFSVSGG VNTRDGFTES VVGLDDINDR DRWNIRGQAL
YEPTEDVKLR LIADYSKIEE ACCSVENSIN GPTTAAVRAL GGMDLDETGS FAYQSTLNSD
PDNNVKDSGV SLQLDVDFDG YSFTSISALR TNDSDFMNDV DYTSLDILNE GGYTDIETIT
QEFRLTSTGD RQLEWMFGAF VFHEEVTTGD TLYYGNDIRN YFDVLMAAGG APGLLAGVEG
AYGLDPGTFF SGDSAVSSEF EQENDAYSIF ASFDYHINDD FTAIFGVSYT NDQKEINISQ
QHSDVLSALD LATVPTLYGV PIGSIPQLAP AVPVIESLQF LPPMLGLPNA VENNKSDDSK
TTWSLRLSYE ITDNVNIFAT AATGFKATSW NLSRYSSPFA SDQSALETAG IALPNQVYGG
RYASPEEALV YELGIKTQFE HGSFSATIFD QTIEGFQSSI FIGTGYVLAN AGKQSTQGLE
FDSNYNLTED WSFTLAGTFL DPVYDSFVGA SGLDGPVDLS GEKPAGIHEV SITAGIVYNF
EVFNGADGYI RTDYLFESDT KLAENTPESL SREVNTFNAS TGLAFDNGVS LQLWVRNLTN
DEYLLSAFPP PIQAGSFNGY PNQPRTFGAN ISYQF
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