| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfri_2001 |
|---|
| Symbol | |
|---|
| ID | 4278913 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella frigidimarina NCIMB 400 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008345 |
|---|
| Strand | + |
|---|
| Start bp | 2374397 |
|---|
| End bp | 2375338 |
|---|
| Gene Length | 942 bp |
|---|
| Protein Length | 313 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 42% |
|---|
| IMG OID | 638134788 |
|---|
| Product | polysulphide reductase, NrfD |
|---|
| Protein accession | YP_750685 |
|---|
| Protein GI | 114563172 |
|---|
| COG category | [P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG3301] Formate-dependent nitrite reductase, membrane component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 0.438759 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAACAATA TATGGGGCGA CATGGCGCAA TATGATCCAG TGACATGGAA CTGGGTTATC
GCCGTTTATT TATTTATGGC CGGTTTATCG GCAGGTAGCG TACTCATTGG TATTGGTATG
CGTTGGTATA GTAAAGGGGG CAATATTGAA ACTTCGATAT TAAAAGCCTC TGCCATTATC
GGGCCTGTAG CCATAAGCTT AGGCTTGGCC TGTTTAGTGT TTGATTTAAC CAAACCATTT
CATTTCTGGC TCATCTTAGT CAATTATAAT TTTACATCTG TAATGGCGAT TGGTGTGTTG
GCCTTATTGG CTTATTCACC GTTAGGTATT GCTTATGCAT TGATTGTATT GCGAGATGAT
TTACCAAAGT GGAAGTTAGG ATTTTTAGCC CCAATAGGGC ACATGCTATT GCCAATGCGT
AAAGTAATCG AAATCCTACT GTTTGTACTT GCTATAGGTG TTGGTGCGTA TACTGGCTTT
TTAATCTCGG CCATGAATGC CTACCCAATG CTCAATACTG CAGTATTACC GGCATTGTTT
TTAGCATCTG GTTTATCAGC GGGAGCAGCG GGTAACTTGA TCGTTGCGTT AACCTGTTTT
AATAGCAGCC CCCATGATAA CGATGTGGCA AAAATGCATA GCCTAGATTT ACCGGTAATC
GTGTCTGAAA TGATGTTTTT AGTGATGCTG TTTAGTACTC TTTATTTCAC CGGAGGCGCA
GCAGCTGAAG CATTAGCATC GTTAAGTACC GACATTTGGG CTAGCGTGTT TTGGATAGGC
GTAGTCGGAA TCGGGTTTAT CGTTCCTATT CTGTCTATGT TTTTACCTGC CAATGCTCGT
CACACTAAAG CCATCATGAT ATCAGTTGCC TGTTGTAGTT TGACGGGGGT TTTAGCGTTA
CGCCACTTCA TCATCTATGC TGGACAAAGT TATATAAGTT AA
|
|---|
| Protein sequence | MNNIWGDMAQ YDPVTWNWVI AVYLFMAGLS AGSVLIGIGM RWYSKGGNIE TSILKASAII
GPVAISLGLA CLVFDLTKPF HFWLILVNYN FTSVMAIGVL ALLAYSPLGI AYALIVLRDD
LPKWKLGFLA PIGHMLLPMR KVIEILLFVL AIGVGAYTGF LISAMNAYPM LNTAVLPALF
LASGLSAGAA GNLIVALTCF NSSPHDNDVA KMHSLDLPVI VSEMMFLVML FSTLYFTGGA
AAEALASLST DIWASVFWIG VVGIGFIVPI LSMFLPANAR HTKAIMISVA CCSLTGVLAL
RHFIIYAGQS YIS
|
|---|
| |