| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfri_1999 |
|---|
| Symbol | |
|---|
| ID | 4278911 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella frigidimarina NCIMB 400 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008345 |
|---|
| Strand | + |
|---|
| Start bp | 2371517 |
|---|
| End bp | 2373799 |
|---|
| Gene Length | 2283 bp |
|---|
| Protein Length | 760 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 44% |
|---|
| IMG OID | 638134786 |
|---|
| Product | twin-arginine translocation pathway signal |
|---|
| Protein accession | YP_750683 |
|---|
| Protein GI | 114563170 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG0243] Anaerobic dehydrogenases, typically selenocysteine-containing |
|---|
| TIGRFAM ID | [TIGR01409] Tat (twin-arginine translocation) pathway signal sequence |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGATTGAGT TAAATCGACG TCATTTTTTA AAGGGAGCGG GTGCCAGTGG TGCCACATGT
GCTTTAGCAA GCATGCTTCC TGGTTCGCTA GCAGCGTTAG AAAAGTCACC ATTAAAAGGT
GTTGCTTCTG AAGTTGCCAG TATTTGTGAA ATGTGTTCAA CGCGGTGTCC TATTAAGGCA
CGCATTGTAG ATGGCAAAAA CGTATTTATT ACGGGTAATA AAGAAGCAAA ATCGTTTGGT
GGCAAAGTCT GCGCCCGAGG TGGAGCTGGC CATAGCTTAC TTTACGATCC ACAGCGTATC
GTTAATCCAC TTAAGCGTGT GGGTGAACGC GGCGCAGGTG AATGGGCTGA GATTTCATGG
GCTGATGCTT ATAAAGAAAT CGCCACCAAA ATGAACCAAA TAAAACAACA ATATGGTGCA
GAAACCATAG CGTTCTCTTC AAAGTCTGGT TCACTTTCAG GTCATATATT TCATCTTGCT
GAGGCTTTTG GATCGCCCAA TACATTTACT CATGCCTCAA CGTGCCCGGG CAGTTATGTT
GTTGCTGCTA AGGCAATATT TGGCACCAAA ATGAAGCGTG ATTTGAGCAA TGCCAAATAC
ATCATCAACT TTGGGCATAA CTTGTATGAA GGCATCAATA TGTCTGAAAC AAGAGGCTTG
ATGCAAGCTC AAATGGATAG AGGAGCCAAG TTAGTCGTAT TTGAACCTAG ATTCTCAATT
GTGGCAGATA AGGCTGATGA GTGGCATGCA ATACGTCCGG GTACCGACGT CGCGGTCGCG
TTAGCGTTAT GTCATGTGTT GATTAATGAC AATTTATATG ACCATGACTT CATTGAAAAA
TATGTTGTTG GTTTTGATGA GTTCGCCGCT GAAGTACAAA AATATACCCC AGAATGGGCC
GAAACTATTT CAGATGTGTC TGCCACTGCC ATTCGACGTA TTGCACATGA ATACGCAAGC
CACGCTCCAC ACGCCGTTGT TGATTTTGGC CACAGGGCAA CCTTTACACC AGAAGAGTTC
GACATGCGCC GTGCACTATA TGCAGCCAAC ATATTGATTG GCAACATCGA ACGAAAAGGG
GGCATTTACA TGGGCCAGAA AGCACCTGGC TACAATAAAT TTGCCGGTGA GAATGTGGCC
CCAACGCTAG CCAAACCGGG TGTTAAAGGC ATGCCTAAGC CAACGGCAAT CCGCATTGAC
CAGGTTGAAA AGCAGTATGC AATGATGTGG TCAAATGGTG GCATTTATCA AACCATTTTA
GATGCAACAT TAGACGCCAA ACCGTATCAA TTAAAAGCAT GGGTAATGAG CCGTACTAAC
CCAATGCAAA CCCTTACAGA CCGAGCCAAA GTAGAACAAT CGCTTAAAAA GCTAGATTTA
GTGGTGTCAT GTGACCTGTA TATCAGTGAA ACCGCTGCAT ACGCAGATTA TATTTTGCCA
GAATCGACTT ATCTTGAACG CGATGAAGAG ATACAAGATA AATCAGGTAA AAATCCGGCC
TATTATGTTC GTCAACGTGT GGTTGAAACC ATTGGTAATA CTCGCCCAAG CTGGCAAATA
TTTAAAGAAT TAGGTCAAGC TTTAGGGCTT GAACAATTTT ACCCTTGGGA CAATATACAA
ACATTGCAAT TAATGCAGCT GAATCGCGAT CATAGCTTAT TGGAACACAT CAAAAAAATG
GGTTACGTCA GCTACGGTAA GCCATTGATG TTGCGTGAAC CTGAAATGGT TACCGAATTC
GTTAAGGCTT ATCCCAATGC CAAAAGTGTT GATGCAGACG GTACTTATGC AAGCTCAATG
AGCTTTAAAA CACCCAGCGG CAAGATTGAG TTAACGTCAC CCAAAATAGA AGGCATGGCT
CCAGGTCGAG GTGTGATTAA GCATCGCGAT GTACAACTAA AACAAGCTGA TGAGTTGTAC
TTTATACAAG GGAAGGTCGC GGTACACACC AATGGCGCCA CCCATAATAT TCCAATGTTA
GCCAATCTTA TGTCGAAAAA TGCGATTTGG ATCCATCCAA TAACGGCCGG GCGACTCGAT
ATCCATAGCG GTGATGCGAT TAGATTAACC AGCAGTGTGG GCAGTGAGGA AGGCACCGCC
TTAGTCACCC CAGGGATTCG TCAAGATACT GTGTTTGCAT ACATGGGCTT TGGCTCCAAA
AATAAAGAAC TGGTGCGAGC CACAGGAAAA GGTATCCATT GCGGCAACCT ACTTCCTAAT
GTCATCGCCC CCATCTGTGG CATGAATTTA CATACCACGG GTGTCAAGTT GGTAAAAATT
TAG
|
|---|
| Protein sequence | MIELNRRHFL KGAGASGATC ALASMLPGSL AALEKSPLKG VASEVASICE MCSTRCPIKA
RIVDGKNVFI TGNKEAKSFG GKVCARGGAG HSLLYDPQRI VNPLKRVGER GAGEWAEISW
ADAYKEIATK MNQIKQQYGA ETIAFSSKSG SLSGHIFHLA EAFGSPNTFT HASTCPGSYV
VAAKAIFGTK MKRDLSNAKY IINFGHNLYE GINMSETRGL MQAQMDRGAK LVVFEPRFSI
VADKADEWHA IRPGTDVAVA LALCHVLIND NLYDHDFIEK YVVGFDEFAA EVQKYTPEWA
ETISDVSATA IRRIAHEYAS HAPHAVVDFG HRATFTPEEF DMRRALYAAN ILIGNIERKG
GIYMGQKAPG YNKFAGENVA PTLAKPGVKG MPKPTAIRID QVEKQYAMMW SNGGIYQTIL
DATLDAKPYQ LKAWVMSRTN PMQTLTDRAK VEQSLKKLDL VVSCDLYISE TAAYADYILP
ESTYLERDEE IQDKSGKNPA YYVRQRVVET IGNTRPSWQI FKELGQALGL EQFYPWDNIQ
TLQLMQLNRD HSLLEHIKKM GYVSYGKPLM LREPEMVTEF VKAYPNAKSV DADGTYASSM
SFKTPSGKIE LTSPKIEGMA PGRGVIKHRD VQLKQADELY FIQGKVAVHT NGATHNIPML
ANLMSKNAIW IHPITAGRLD IHSGDAIRLT SSVGSEEGTA LVTPGIRQDT VFAYMGFGSK
NKELVRATGK GIHCGNLLPN VIAPICGMNL HTTGVKLVKI
|
|---|
| |