Gene Sfri_1950 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSfri_1950 
Symbol 
ID4278862 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella frigidimarina NCIMB 400 
KingdomBacteria 
Replicon accessionNC_008345 
Strand+ 
Start bp2315241 
End bp2315834 
Gene Length594 bp 
Protein Length197 aa 
Translation table11 
GC content41% 
IMG OID638134737 
Productphage integrase family protein 
Protein accessionYP_750634 
Protein GI114563121 
COG category[L] Replication, recombination and repair 
COG ID[COG4973] Site-specific recombinase XerC 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones22 
Plasmid unclonability p-value0.827298 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGTGGACGA AGAAAGGTCA TTTAACTGGG CAGAAAAAGC CCTTTAAGCT TGAGGATATC 
TGGCGTATCC GTACCAGGCT CGAAATCGAA GGTAATATTA TGGAGTTGGC TCTGCTCAAC 
CTCGCCATCG ATTGTAAATT ACGTTCATGT GATTTGCTCA GAATGAAAGT TCGAGATATT 
TCATCGGGTG GTGTTATTCA AAATAGAGTT CTTTATCAAC AGAGTAAAAC GGAACGTGAG 
GTTCAATTTG AAATAACTTC TCGTACAGCT CAATCATTAA CACAGTATTT AATGCAAAGT 
GGCTTATCGT CATCAAGTTA TATATTCCCT AGCCCTCGTA AGAACGGGAG ACCTATGAGC 
TATAGCTGCT ATGCAACTAT AATTCGTCGC TGGGCGTCAC AACTTGGTTA TGACTATTAC 
CTGTATGGTA CTCACTCTAT GCGAAGAACA AAGGCAACCT TGATCTATGC ACGAACGAAA 
AACATCCGAG CCGTACAGCT ATTGCTTGGT CACGCCAAGT TGGATAACAC AATTCGTTAT 
TTAGGGGTAG AGATGGAAGA TGCCCTTAAT ATATCTGAGG ATATAGAGTT GTAA
 
Protein sequence
MWTKKGHLTG QKKPFKLEDI WRIRTRLEIE GNIMELALLN LAIDCKLRSC DLLRMKVRDI 
SSGGVIQNRV LYQQSKTERE VQFEITSRTA QSLTQYLMQS GLSSSSYIFP SPRKNGRPMS 
YSCYATIIRR WASQLGYDYY LYGTHSMRRT KATLIYARTK NIRAVQLLLG HAKLDNTIRY 
LGVEMEDALN ISEDIEL