Gene Sfri_1927 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSfri_1927 
Symbol 
ID4278839 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella frigidimarina NCIMB 400 
KingdomBacteria 
Replicon accessionNC_008345 
Strand+ 
Start bp2281991 
End bp2283013 
Gene Length1023 bp 
Protein Length340 aa 
Translation table11 
GC content38% 
IMG OID638134711 
Productdiguanylate cyclase 
Protein accessionYP_750611 
Protein GI114563098 
COG category[T] Signal transduction mechanisms 
COG ID[COG3706] Response regulator containing a CheY-like receiver domain and a GGDEF domain 
TIGRFAM ID[TIGR00254] diguanylate cyclase (GGDEF) domain 


Plasmid Coverage information

Num covering plasmid clones12 
Plasmid unclonability p-value0.0449945 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGCATAATA CCCAAAATCT AGAACAAACC TCGCATATAC TGCATTTAGC GTTACCTAAA 
ATGGCGACCT TATCGATTCC TGTTACGCCA GAAAACTATG CTATTTGGTT TGATTATTTT 
GCTGAGAGGA ACCTTAATTT AAAACGCGCA ATTGACGGTT TAATTGCTAA TGGTGTTCAA 
TTTACTCCCG AAGTTAATTT AGGCTTATAC AATCGATTTA TTGAAGAGCA ATCACCAGAA 
GTTATTGAGA ACGTACAAAT CGAAACTCAA ATCCTGATTA ACAGCTTACT AAATAAGATT 
GAGCAGTTAA ATGTTGGCAC TGAATCATTT TCAACTAACC TCAATGAATT TGGTGAAAAG 
CTACAAACAA ATCCTAATAC TGATGAACTT AATCTTATTG TTGGCTCTAT CATCGCCGAA 
GTTGACCAAG TCATTGCTAA TAATCATCAA ATGTCTGCAA GTCTTGAATC ATTATCGGAT 
GAAATTGCCA ACCTTAAAGA CGAAATGGAA AATTTGAGTA AAGTGGCTAT GACGGATGAA 
CTCACATCGT TAAAAAACCG CCGCTCCTAT GAATTGTTTG CCGCGGAGCA GATGACCAAG 
TTTGTCGACA CTCAAACAGT ATGCAGTTTG TTGATGATAG ACATCGATAA TTTCAAGATG 
TTTAATGATA CTTTTGGACA CTTAATTGGT GATAAAGTGT TGGCTTATGT GGCTTTAGCC 
ATGAAGCATA CCGTTAAAGG CGATGATTTG GTTGCCCGCT ATGGTGGTGA AGAGTTTGTG 
GTAATGTTGC CCAATGCCAA GCTTATTGAT GCCGTTAATG TGGCTGAAAA AATACGTGAA 
AGAATTGCAT TAAAACAGCT TTCTATTGGC AAAGAAAAGA AACAGAACCT GGGCCATATT 
ACCGTTTCTA TTGGTGTGGC CACTATTCAA ACGGGTGATG ATGTAGATAC CTTATTATCG 
CGTGCTGACG AACAACTTTA TATTGCCAAA GCCGCTGGTA AAAATTGCGT CAAGTTTGGT 
TAA
 
Protein sequence
MHNTQNLEQT SHILHLALPK MATLSIPVTP ENYAIWFDYF AERNLNLKRA IDGLIANGVQ 
FTPEVNLGLY NRFIEEQSPE VIENVQIETQ ILINSLLNKI EQLNVGTESF STNLNEFGEK 
LQTNPNTDEL NLIVGSIIAE VDQVIANNHQ MSASLESLSD EIANLKDEME NLSKVAMTDE 
LTSLKNRRSY ELFAAEQMTK FVDTQTVCSL LMIDIDNFKM FNDTFGHLIG DKVLAYVALA 
MKHTVKGDDL VARYGGEEFV VMLPNAKLID AVNVAEKIRE RIALKQLSIG KEKKQNLGHI 
TVSIGVATIQ TGDDVDTLLS RADEQLYIAK AAGKNCVKFG