Gene Sfri_1886 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSfri_1886 
Symbol 
ID4278344 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella frigidimarina NCIMB 400 
KingdomBacteria 
Replicon accessionNC_008345 
Strand+ 
Start bp2229793 
End bp2230395 
Gene Length603 bp 
Protein Length200 aa 
Translation table11 
GC content40% 
IMG OID638134670 
ProductSmr protein/MutS2 
Protein accessionYP_750570 
Protein GI114563057 
COG category[S] Function unknown 
COG ID[COG2840] Uncharacterized protein conserved in bacteria 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones19 
Plasmid unclonability p-value0.507234 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGTCATTAA GTGATGACGA ATTATTTTTA CAAGAAATGG CCGATGTGAC CCCTCTAAAG 
TTTGAACATC AGCCAACATC CCCTCAAGTA TGGCTTAATC CATTAAGTTT AACAGATGCA 
CAACTAGCAA AGCGAGCGGC TGCTGAACAA CATGAGTTGT TACAATTATT ACCTATAGAG 
CCTTTTCTGT TTACTCCAGT TAAGCCGGAT GATGTAGTGA GTTACAAAAT GGATGGCATT 
CAAGACGAAG TTTTTAGACT ACTCAGACTT GGAAAGTACC GTGTTCACAC TGAACTAGAC 
TTACATGAAT ATCGACTTTT ACAGGCACGT GATAGTTTGG TTAATGGTGT GTTGAGTGCT 
TATGAGCGCG GCGAACGTAA TATATTGGTT ATTCATGGTA AGGGCTATAA AAGTAAACCT 
TATCCAGCGT TGATGAAATC CGCGGTTTGT CATTGGTTAC GATCTATTGA GCCTGTAATC 
GCATACCATT CAGCCACTAA ACAGAGCGGT GGGGTCGGAG CTGTCTTTGT GATGCTAAAA 
AAATCACAGC AAAAAAGAAT TGAAAATAGC GAGCTGAACA GAAAAGGTCA CGGTTTTAGG 
TAG
 
Protein sequence
MSLSDDELFL QEMADVTPLK FEHQPTSPQV WLNPLSLTDA QLAKRAAAEQ HELLQLLPIE 
PFLFTPVKPD DVVSYKMDGI QDEVFRLLRL GKYRVHTELD LHEYRLLQAR DSLVNGVLSA 
YERGERNILV IHGKGYKSKP YPALMKSAVC HWLRSIEPVI AYHSATKQSG GVGAVFVMLK 
KSQQKRIENS ELNRKGHGFR