Gene Sfri_1856 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSfri_1856 
Symbol 
ID4278316 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella frigidimarina NCIMB 400 
KingdomBacteria 
Replicon accessionNC_008345 
Strand+ 
Start bp2193304 
End bp2193948 
Gene Length645 bp 
Protein Length214 aa 
Translation table11 
GC content43% 
IMG OID638134639 
Producttranscriptional regulator, GntR family protein 
Protein accessionYP_750542 
Protein GI114563029 
COG category[K] Transcription 
COG ID[COG1802] Transcriptional regulators 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones22 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGATCCAGC CGATTACTTC TGCAGATAAG ACTTTTGTAG CCCTTAGAGA CGATATAGTC 
GAAGGTCGTA TTCAGGCTGG CTCAAAATTG AGCGAAACTG AATTGTCGAC AAAGTATGCC 
GTGAGTAGAG CCGTGATCCG TGAAGCCATT AACCGCTTAG AGTCGTGCCA TATTGTTGAG 
CGTAAAGCCA ACGTAGGCGC TCGTGTGGTG GCGTTATCTC CGCAAGGCTT GATAGAGCTG 
TATCAAGTGC GTGAATCACT TGAAGGCATG GCGGCACGTT TAGCGGCAAA GAACATGACT 
GATGATGAAA TCGCTGATTT AAACCATTTA TTACAATCCC ACTTTGACGA GGTCAAAGGG 
GGCGAGTCTT ATTATCAAGA AGCCGGTGAT GTTGATTTTC ATTATCGGAT TATTTTAGGC 
AGTAAAAACA AACACCTAAT TTCAATGCTG TTTGATGGAA TTTACCATTT AGTGCGCATG 
TATCGCGTAC AACTTGGCAT GGCGGGTCCG CGTGTGACCA CCGCTTATGA TGAACACAAA 
CACATTGTTC AGGCCATTTT AAATCGTGAT GCAGAATTAG CTGAAATGCT GATGCGTCGC 
CACATTATGT ATTCTAAAAA TAATATCGAA CACAAATTAT CGTAA
 
Protein sequence
MIQPITSADK TFVALRDDIV EGRIQAGSKL SETELSTKYA VSRAVIREAI NRLESCHIVE 
RKANVGARVV ALSPQGLIEL YQVRESLEGM AARLAAKNMT DDEIADLNHL LQSHFDEVKG 
GESYYQEAGD VDFHYRIILG SKNKHLISML FDGIYHLVRM YRVQLGMAGP RVTTAYDEHK 
HIVQAILNRD AELAEMLMRR HIMYSKNNIE HKLS