Gene Sfri_1839 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSfri_1839 
Symbol 
ID4278106 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella frigidimarina NCIMB 400 
KingdomBacteria 
Replicon accessionNC_008345 
Strand
Start bp2171480 
End bp2171938 
Gene Length459 bp 
Protein Length152 aa 
Translation table11 
GC content45% 
IMG OID638134623 
Producthypothetical protein 
Protein accessionYP_750526 
Protein GI114563013 
COG category[S] Function unknown 
COG ID[COG3305] Predicted membrane protein 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones22 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAAACATT CTGATGGCGG CGTTCGTGCT GTCGCGGTGC TTGAAGCAAC AAAAGGCTTA 
CTGGCATTAC TGGTTGCCAT TGGCTTGCAT GTCTACACGG GCCAAAATCT GTCTGCGTTA
GCGCTTGAGT TGGTGAGGCA TTTGCACCTA AATCCAGCGA GTCATTACCC TGGTATTTTT
ATTTCTGCGG TGGGTTCAGT ATCGCAATCT AGTCTGACGT TAATGGCGTT TGGTGCGGCT
GTATATACAT CGGTGCGCTT TATTGAAGCC TATGGTTTAT GGCATAACAT GCGCTGGACC
CAATGGTTTG CACTGCTTAG CGGCGCGATA TATTTACCTT TTGAGCTTTA TGAAATGATT
CGCCATTTTA GTATGCTCAG TGTAATTGTG CTGCTGATTA ACCTTGTGGT GGTCATGTAT
ATGTATTTTG TGTTGTTTCC TCGTCGTGCA GTAATATGA
 
Protein sequence
MKHSDGGVRA VAVLEATKGL LALLVAIGLH VYTGQNLSAL ALELVRHLHL NPASHYPGIF 
ISAVGSVSQS SLTLMAFGAA VYTSVRFIEA YGLWHNMRWT QWFALLSGAI YLPFELYEMI
RHFSMLSVIV LLINLVVVMY MYFVLFPRRA VI