Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sfri_1824 |
Symbol | |
ID | 4278092 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella frigidimarina NCIMB 400 |
Kingdom | Bacteria |
Replicon accession | NC_008345 |
Strand | - |
Start bp | 2152471 |
End bp | 2153256 |
Gene Length | 786 bp |
Protein Length | 261 aa |
Translation table | 11 |
GC content | 42% |
IMG OID | 638134609 |
Product | extradiol ring-cleavage dioxygenase III subunit B |
Protein accession | YP_750512 |
Protein GI | 114562999 |
COG category | [S] Function unknown |
COG ID | [COG3384] Uncharacterized conserved protein |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 18 |
Plasmid unclonability p-value | 0.436879 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGCAACAAC ATCAAAACCC CCTGTTTATT TCGCATGGTT CTCCTATGAT GGCTGTTGAA AACAGCAACA CATCGCGTTT TTTACAACGA CTAGGCCAAC AGCTCCCTAC CCCAAAAGCC ATTGTGGTAT TTTCGGCCCA TTTAGATGTC ACTGACGATG TGGTGATTAC CGCTGGAGCG CGTCCTGAAA CAATACACGA TTTTTATGGT TTCCCTGATG AACTGTATCA AATTCGCTAC CCTGCACCTG GCGCACCTGT ATTGGCAAAA CAAATTGCCG ACACGTTTAT GAGTGCAGGT ATTAAGGTCA ATTTATCTAT AACACAAGGT TGGGATCATG GCGTGTGGAT CCCACTGAAA TTAATGCACC CGCAGGCGAA CATTCCCATT GTACAAATAT CCATTAATAC CCGTGTAAGT GCAGCGCAAA ACTATCGTTA TGGACAGCTT ATAGCATCGT TAAAACACGA CAACATTCTT ATCATTGGTT CTGGTGGAAT AAGCCATAAT TTAAGCGAGG TTTTTCGTCA GCCTAAAACA CCCAATGGCG TTGATATGAT GAATCAATTC ACAAAGTGGG TTGAAGAGAA ATTAGTAAAC AATGATACCG AATCGTTGTT GAGCTACATA CAGCTCGCGC CGTTTGCCCA GTTTAATCAT CCGACTCAGG AACATTTTTT ACCGCTTATT GCTATTTTAG GAGCAAGTGA AGCAAGTGTT GCCAAAAAAA TACATCAAGA TGTTGAGTAT GAATTGTTAG CACTCGATGC TTACTCGTTT ACTTAA
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Protein sequence | MQQHQNPLFI SHGSPMMAVE NSNTSRFLQR LGQQLPTPKA IVVFSAHLDV TDDVVITAGA RPETIHDFYG FPDELYQIRY PAPGAPVLAK QIADTFMSAG IKVNLSITQG WDHGVWIPLK LMHPQANIPI VQISINTRVS AAQNYRYGQL IASLKHDNIL IIGSGGISHN LSEVFRQPKT PNGVDMMNQF TKWVEEKLVN NDTESLLSYI QLAPFAQFNH PTQEHFLPLI AILGASEASV AKKIHQDVEY ELLALDAYSF T
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