| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfri_1785 |
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| Symbol | |
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| ID | 4277424 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella frigidimarina NCIMB 400 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008345 |
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| Strand | - |
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| Start bp | 2097631 |
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| End bp | 2099550 |
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| Gene Length | 1920 bp |
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| Protein Length | 639 aa |
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| Translation table | 11 |
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| GC content | 42% |
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| IMG OID | 638134569 |
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| Product | alpha amylase, catalytic region |
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| Protein accession | YP_750473 |
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| Protein GI | 114562960 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG0366] Glycosidases |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 0.48062 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTCATCAC ATTGCTCACA CCCAACGCCA CTAGGCCAAC ACCGCATCAG CAAGCTCGCA
TCACGTTTAT TATTGGGCTG TGCGCTCAGT GTCAGCGCCA TGTCGGTGAA TGCCGCACTT
AACGTCGAAC CCATGTCATG GTGGGCGGGT ATGCAACAAC CTAAGTTACA ACTGTTGATT
GCTGGCGATA ACATTCGTGA CACCCAAGTG AAATTAATCA AGGCTCAAGG TGTCACACTC
AACAGCGTTG ATAAAACTGA CAGTAACAAC CATTTATTTA TTAATTTGGA CTTAAGCCAA
GCTAAACCAC AACGACTTAC TTTGGGTTTA TATAAAGGCG AACAATTAGT TGAACAATTT
GATTATGTGC TGCAAACACG TCAAAAAGGC TCACGCGATC GCCAAGGGTT TAGTAATAAA
GATGTGATTT ACTTAATCAC TCCAGATCGT TTTGTTAACG GTAATCCCGA CAACGATAAC
CATCCAGACA TGCTTGAAAA AGCTGACCGT AGTTTTGACG GTGGTCGCCA TGGTGGTGAT
ATTATGGGGA TCCGCAAAGC ACTGCCCTAC TTGCATGATT TAGGCGTGAC TCAGTTGTGG
ATTAATCCAT TGCTTGAAAA TAACCAACAA AAATATTCTT ATCACGGCTA TTCCACTACA
GACTTTTATA ACATTGATCC TCGCTTTGGT AGCAATCAAG AATACCAAGC CTTGGTAGAA
GAAGCGCAAA CCTTTGGCAT TGGCATCATC CAAGATGTGG TTGTTAATCA CATGGGATCC
GGTCATAAAT GGATGAGCAG TATGCCGAGT AACACTTGGA TTAATGGTCA ATCACGTTGG
GTCAATGATC CGACAGATGT CAGTTACTCA AGCCATAGAC GCACTACCGT ACAAGATCCT
TACTCTGTGA ATGCAGACAC GGTAGATTTT AGCGATGGAT GGTTTGACGT CACTATGCCA
GATCTCAATC AACGCGATCC GCACATGGCA ACATACTTAA TTCAAAATAG TATTTGGTGG
GTTGAATACG CGGGGCTGAG CGGTATTCGC GAAGACACCT ACTCTTATGC TGACAAAGAT
TTTCTAACAG CATGGTCAAA GGCCATTATG GATGAATACC CGCATTTTAA TATTGTTGGT
GAAGAATGGA GTAGTAACCC AGTGACGGTA AGCTACTGGC AAGCTGGAAA GAAAAATGCA
GATGGTTATC AATCTTTTGC ACCTAGCATG ATGGATTTTC CGTTGTATGA CACTCTTATA
GCAAGCTTAA CCAAAGAGGA AGATTGGGGA GCTGGATTTA TCGATCTTTA CCAAATGTTG
GCTAACGATG TGGTGTATGC CAATCCAAGC CAGTTAGTGT TATTTGAAGG TAATCACGAC
ACTAACCGTA TTTACAGTTT AATGAAAAAC GACATTGAAC TGTACAAAAT GGCCATGGCT
TATGTACTGA CCAGCAATCG TATTCCACAA ATATTTTACG GCTCAGAAAT AGTCATGCAA
AGTCCTACAG AAGACCGTAA CGACGGAGCT GTACGCGCAG ACTTCCCAGG TGGCTGGCCG
CAAGACAGTG TCAATGTATT TACAGGTAAA GGTTTGAATG CACAACAAAC CGAAGCACTT
ACCTTCGTAC GTACATTATT AAATTACCGT AAAAATTCAT TAGCGATTCA ACAGGGTAAA
TTACAGCACT TTGTGCCAAA AGACGGTGTT TATGTTCAAA GTCGTCATCA AGGCGATGAA
ACGTTACTGA TCATTTACAA TAAAAACAGC CACGCCATTG AGCTTGATTT ACAACGTTTT
AAACCTGCTA TTAATCACAA CACTGCTGGC GTTGATATTA TCAACAAACA AACGTATTCA
TTATCTAAAC CGCTTACGTT ATCCAATAAA GGTGTCACGA TTCTTAAACT GAACCGTTGA
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| Protein sequence | MSSHCSHPTP LGQHRISKLA SRLLLGCALS VSAMSVNAAL NVEPMSWWAG MQQPKLQLLI
AGDNIRDTQV KLIKAQGVTL NSVDKTDSNN HLFINLDLSQ AKPQRLTLGL YKGEQLVEQF
DYVLQTRQKG SRDRQGFSNK DVIYLITPDR FVNGNPDNDN HPDMLEKADR SFDGGRHGGD
IMGIRKALPY LHDLGVTQLW INPLLENNQQ KYSYHGYSTT DFYNIDPRFG SNQEYQALVE
EAQTFGIGII QDVVVNHMGS GHKWMSSMPS NTWINGQSRW VNDPTDVSYS SHRRTTVQDP
YSVNADTVDF SDGWFDVTMP DLNQRDPHMA TYLIQNSIWW VEYAGLSGIR EDTYSYADKD
FLTAWSKAIM DEYPHFNIVG EEWSSNPVTV SYWQAGKKNA DGYQSFAPSM MDFPLYDTLI
ASLTKEEDWG AGFIDLYQML ANDVVYANPS QLVLFEGNHD TNRIYSLMKN DIELYKMAMA
YVLTSNRIPQ IFYGSEIVMQ SPTEDRNDGA VRADFPGGWP QDSVNVFTGK GLNAQQTEAL
TFVRTLLNYR KNSLAIQQGK LQHFVPKDGV YVQSRHQGDE TLLIIYNKNS HAIELDLQRF
KPAINHNTAG VDIINKQTYS LSKPLTLSNK GVTILKLNR
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