Gene Sfri_1675 details

Gene Information

• Locus tag: Sfri_1675
• ID: 4277701
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Shewanella frigidimarina NCIMB 400
• Kingdom: Bacteria
• Replicon accession: NC_008345
• Strand: +
• Start bp: 1978799
• End bp: 1980781
• Gene Length: 1983 bp
• Protein Length: 660 aa
• Translation table: 11
• GC content: 47%
• IMG OID: 638134460
• Product: phage terminase GpA
• Protein accession: YP_750364
• Protein GI: 114562851
• COG category: [R] General function prediction only
• COG ID: [COG5525] Bacteriophage tail assembly protein

Plasmid Coverage information

• Num covering plasmid clones: 26
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAATATAT CAGAAGCACA GATTAAGAAT TTGAAAGCTG CTGTGGCTGC TGGCCTTAAA 
TCGTTTTATC GTCCACCTAT GTTGACCTGT AGTGAATACG CAGACACGCA TTTTTATATG 
TCGTCTGAAT CGTCTTACAC CGAAGGTAAA TGGGAAAGCT TACCGTTTCA AATCGGCATA 
TTGAATGCCA TGGGTAACGA CCAAATCACC ACGCTGAACA TTATGAAGTC AGCGCGTGTG 
GGTTACACCA AAATGCTGAT GGCCAATGCG GGTTACAAGA TAGAACACAA AAAACGTAAC 
GTGCTGATAT ACCAGCCGCG TGACGGTGCC GCCAAAACGT TCATGAAAAA GCACGTTGAA 
ACGGCCATAC GCGACATGCC GATTTGGAAA GCCTTAGCGC CGTGGATTGG TCGCAAACAT 
AAAGACAGTA CCTTAGAAGA TAAAATTTTT ACCAACGGTA AAACCTTAAT GGTGCGTGGT 
GGTACCGCCG CGGCTAACTA CCGTGAAATA TCCACTGATG ATGTTATTTA CGATGAGTTA 
GCGGGTTTTG ATGAGTCAAT CGAACACGAA GGTAATGCCA CATCGTTAGG TGATACCCGT 
GTTGAACTGT CGTTGTTTCC TAAATCGATA CGGGGTTCAA CGCCTAAAGT ATTAGGTACC 
TGCCAAATTG AAAAAGCCTG TAGCGAAAGC CAGTACCAAT TTAGATTTAA CTTACCATGC 
CCACATTGTG ATGAATTGCA GCATTTAAAG TGGGGCGGCA AAACTGAACC CTTTGGTATT 
AAGTGGCAAG GTAGCGACCC AAAAACCGCC TATTACGTGT GCGAGCACTG CGGGTGCTGC 
ATTGAAAACA ATCAACTGCA CGACATGGAA GAACACCCAA GCGCTTTATG GATATGCGAC 
AAAACGGGCG TGTACACCAC AGACTTTATT TCGTTTTTTG ATAAAGACGG CGACGACTTT 
TTAACCCCCG AAAATATCTC GATTTATATC TGGTCGGCCT ATAACACCCT TAACAGTTGG 
GCCAAGTTAG TCACTGAGTT TTACAAAGCT AAAGGCGATA AAGAAAAGTT ACAAACCTTT 
GTTAACACCA AATTGGGCCA GCCGTGGGAC AACGACAACG GCGAACGCAT TGAGTGGGAA 
GACTTAGGCC GCAGGCGTGA AATGTACCCC AACGGCAAAA TGCCCGATTG GGTTGTGTAT 
GTCACGGCGG GTGTTGATAC CCAAGACGAC CGATACGAAG GCCGTGTTTG GGGGTGGGGG 
GCAGGTAAAG AGTGCGCCTT AATCGATAGG TTTATTTTGT ATGGCGACCC AGCCAGCCAA 
GTGTTGCTGG ATAAAGTCGC GCTGCGCTTA AACCAAAGTT ACCCCCGTAA CGACGGCATT 
GTGTTGAGCA TTGGCACAAC GTGTTGGGAT TCGGGCGGCC ATTACTCCGA TACCGTTTAC 
TCAATGAGTA AAAAGCTGGG TTTGTTCCGC GTGGTACCCA TTAAAGGCGC CAATATGTAC 
GGCAAGCCGA TTGCCAATTT CCCGCGTAAG CGAAGCAACA AAGGTGTGTA TTTAACCGAG 
GTGGGTACCG ACAACGCCAA AGAGTTGATT ATGGCCATGA TGCGCACTCA ACCCAGTGTT 
GATACGCGTA CACCTGGTGC AATTCATTTG CCACTTAACG ACAGCATTTG TGATGACACC 
GAACTGCAAC AGTTAACGTC TGAACGCAAA TTGCCGACAC GCCGCGACGG TCGCATTGTT 
TATCGCTGGG AAGCTGGCGG CAGACGTAAC GAAGCGCTGG ACTGTTTTGT GTATGCCTTG 
GCTGCGCTGT ATATCGCCAT TGATCGCTTT GGCATTAATC TCGACTCGCT CAGTAAAGTG 
ATAACAACCG ACACTCAAAA CGAAGCATCA ACCGAAACAT CCCCACAACC CAAAAAACCG 
AAAAAGAGCC AAGCCAATAA CTGGCTAAAT GGTGGTTCGG CAAAATCAGG AGGCTGGCTG 
TAA 

 

Protein sequence

MNISEAQIKN LKAAVAAGLK SFYRPPMLTC SEYADTHFYM SSESSYTEGK WESLPFQIGI 
LNAMGNDQIT TLNIMKSARV GYTKMLMANA GYKIEHKKRN VLIYQPRDGA AKTFMKKHVE 
TAIRDMPIWK ALAPWIGRKH KDSTLEDKIF TNGKTLMVRG GTAAANYREI STDDVIYDEL 
AGFDESIEHE GNATSLGDTR VELSLFPKSI RGSTPKVLGT CQIEKACSES QYQFRFNLPC 
PHCDELQHLK WGGKTEPFGI KWQGSDPKTA YYVCEHCGCC IENNQLHDME EHPSALWICD 
KTGVYTTDFI SFFDKDGDDF LTPENISIYI WSAYNTLNSW AKLVTEFYKA KGDKEKLQTF 
VNTKLGQPWD NDNGERIEWE DLGRRREMYP NGKMPDWVVY VTAGVDTQDD RYEGRVWGWG 
AGKECALIDR FILYGDPASQ VLLDKVALRL NQSYPRNDGI VLSIGTTCWD SGGHYSDTVY 
SMSKKLGLFR VVPIKGANMY GKPIANFPRK RSNKGVYLTE VGTDNAKELI MAMMRTQPSV 
DTRTPGAIHL PLNDSICDDT ELQQLTSERK LPTRRDGRIV YRWEAGGRRN EALDCFVYAL 
AALYIAIDRF GINLDSLSKV ITTDTQNEAS TETSPQPKKP KKSQANNWLN GGSAKSGGWL