| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfri_1626 |
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| Symbol | |
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| ID | 4277285 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella frigidimarina NCIMB 400 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008345 |
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| Strand | + |
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| Start bp | 1936544 |
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| End bp | 1937170 |
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| Gene Length | 627 bp |
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| Protein Length | 208 aa |
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| Translation table | 11 |
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| GC content | 44% |
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| IMG OID | 638134411 |
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| Product | sortase family protein |
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| Protein accession | YP_750315 |
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| Protein GI | 114562802 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG3764] Sortase (surface protein transpeptidase) |
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| TIGRFAM ID | [TIGR01076] LPXTG-site transpeptidase (sortase) family protein |
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Plasmid Coverage information |
| Num covering plasmid clones | 22 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGCAGCAAA CAATATCACC GACCAAGCAT TGGATTGTGA TTGTGCTTCT AAGCGTACTG
GGATGTGCAT TATTATTACA GGGAGGTTAT ATGCAAGCTA AAGCCCATTT TGCCCAGTTT
TTAATTGAAC GTGCTTTTGA AAAAACCTTG GCCGATAGCC AACCGCATAA ACCCTGGTCT
TGGGCAGACA CTCATCCGGT GGCTAAGATG CGTGTGTTGC AACAACACAA TGATAGCTTG
CAACCTTTAG GCAGTGACTT GTACGTATTA GCAGGGGCAT CTGGGCGAAA TTTAGCATTT
GGGCCTGGGT TGATGTTAGC AGGATCTTCG TTGGGTGAGC AGGGCAATAT GATTATTGCT
GGCCATCGAG ACAGTCATTT TATGCGTTTA CAATACGTCA AGGTTGGCGA CATGATTGAG
CTTTATAGCA CTGCAGGGGA GCGAGTGTTA TATCAAATTA CTACCACCCA TGTAGTGCAT
GAAACCGACT TAGATGTGCT GGCCCCAACA GCTGAAAGTC ATTTAACCTT GATAACCTGT
TATCCGTTTG ACCAATTGAG TGGCAATGCT GAGTATCGTT ATATTGTTGA AGCTAAGCCG
GTAGTGATCA ACCCTTTATA CAGTTAA
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| Protein sequence | MQQTISPTKH WIVIVLLSVL GCALLLQGGY MQAKAHFAQF LIERAFEKTL ADSQPHKPWS
WADTHPVAKM RVLQQHNDSL QPLGSDLYVL AGASGRNLAF GPGLMLAGSS LGEQGNMIIA
GHRDSHFMRL QYVKVGDMIE LYSTAGERVL YQITTTHVVH ETDLDVLAPT AESHLTLITC
YPFDQLSGNA EYRYIVEAKP VVINPLYS
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